Results 41 - 48 of 48 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 153640 | 0.66 | 0.965511 |
Target: 5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3' miRNA: 3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 79947 | 0.66 | 0.965511 |
Target: 5'- -aCCCGCGucgCCGGGCACGGc- -3' miRNA: 3'- gcGGGUGCca-GGCCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 116028 | 0.66 | 0.965511 |
Target: 5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3' miRNA: 3'- gCGGGuGCCa----GGcCCGUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 116876 | 0.66 | 0.963473 |
Target: 5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3' miRNA: 3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 106602 | 0.66 | 0.958395 |
Target: 5'- aGUCCAUcuuUCCGGGCACcAUCg -3' miRNA: 3'- gCGGGUGcc-AGGCCCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 211539 | 0.66 | 0.962068 |
Target: 5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3' miRNA: 3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 88836 | 0.66 | 0.965177 |
Target: 5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3' miRNA: 3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 136285 | 0.66 | 0.968727 |
Target: 5'- gGCCCGCGGaUCGGccaGCGCuGUCu -3' miRNA: 3'- gCGGGUGCCaGGCC---CGUGuUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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