Results 41 - 48 of 48 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 165722 | 0.66 | 0.954484 |
Target: 5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3' miRNA: 3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 166102 | 0.72 | 0.749627 |
Target: 5'- gCGCCCACGGUCUGGccguCAUcGUCg -3' miRNA: 3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 189308 | 0.68 | 0.925841 |
Target: 5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3' miRNA: 3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 197587 | 0.67 | 0.936392 |
Target: 5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3' miRNA: 3'- gCGGGUGCCAGG-----CCCGU-GUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 206573 | 0.66 | 0.954484 |
Target: 5'- gGCCC-CGGUCgCGGGUAguAUg -3' miRNA: 3'- gCGGGuGCCAG-GCCCGUguUAg -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 220506 | 0.76 | 0.531661 |
Target: 5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3' miRNA: 3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 234570 | 0.68 | 0.901702 |
Target: 5'- -cCCCGCGGgccgCCGGGCGCc--- -3' miRNA: 3'- gcGGGUGCCa---GGCCCGUGuuag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 234612 | 0.7 | 0.841884 |
Target: 5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3' miRNA: 3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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