Results 1 - 11 of 11 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | + | 17922 | 0.66 | 0.950759 |
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Target: 5'- gGGCGGGGU---CGCGGgUcGGGg -3' miRNA: 3'- -UCGCCCCAaauGCGUCgA-CCCa -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | + | 87394 | 0.66 | 0.950759 |
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Target: 5'- cGCGGGGgcgcUGgGCGGUUGaGGUu -3' miRNA: 3'- uCGCCCCaa--AUgCGUCGAC-CCA- -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | - | 74365 | 0.66 | 0.936019 |
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Target: 5'- uGGCGGGGguaacgACaGUAGCgGGGg -3' miRNA: 3'- -UCGCCCCaaa---UG-CGUCGaCCCa -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | - | 130924 | 0.68 | 0.876621 |
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Target: 5'- uGCGGGGgacggUGCugccCAGCUGGGc -3' miRNA: 3'- uCGCCCCaa---AUGc---GUCGACCCa -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | - | 132114 | 0.68 | 0.868662 |
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Target: 5'- cGGUGGuGUUUAC-CAGCUGGGc -3' miRNA: 3'- -UCGCCcCAAAUGcGUCGACCCa -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | + | 132690 | 0.68 | 0.860452 |
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Target: 5'- cGGgGGGGUggACGaCGGCUGGu- -3' miRNA: 3'- -UCgCCCCAaaUGC-GUCGACCca -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | - | 119346 | 0.7 | 0.776632 |
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Target: 5'- cAGCuGGGUaUACGCAGCUGcGUa -3' miRNA: 3'- -UCGcCCCAaAUGCGUCGACcCA- -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | - | 23817 | 0.7 | 0.756033 |
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Target: 5'- cAGCuGGGUaUACcCAGCUGGGUu -3' miRNA: 3'- -UCGcCCCAaAUGcGUCGACCCA- -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | - | 75465 | 0.72 | 0.691497 |
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Target: 5'- gAGgGGGGUguuauagGgGCGGCUGGGa -3' miRNA: 3'- -UCgCCCCAaa-----UgCGUCGACCCa -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | + | 119176 | 0.76 | 0.453089 |
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Target: 5'- cAGCcGGGUUUACGCAGCUGcGUa -3' miRNA: 3'- -UCGcCCCAAAUGCGUCGACcCA- -5' |
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| MIMAT0002184 | kshv-miR-K12-9* | -51.7 | NC_003409.1 | + | 119218 | 1.01 | 0.010957 |
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Target: 5'- cAGCGGGGUUUACGCAGCUGGGUa -3' miRNA: 3'- -UCGCCCCAAAUGCGUCGACCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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