Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 146251 | 0.66 | 0.989526 |
Target: 5'- cCUGGACGGGGgggaCCGGGG-GCGg -3' miRNA: 3'- aGACCUGCUCC----GGCUCUgCGU- -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 143369 | 0.69 | 0.955466 |
Target: 5'- gUCUGGACGAGGugcgcauggguaCgGAGGCGUu -3' miRNA: 3'- -AGACCUGCUCC------------GgCUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 141870 | 0.67 | 0.984612 |
Target: 5'- aUCUGaugaccGACGAGGCCGGcGGCgGCGu -3' miRNA: 3'- -AGAC------CUGCUCCGGCU-CUG-CGU- -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 135974 | 0.73 | 0.794648 |
Target: 5'- gCUGaguaacGAgGAGGCCGAGACGCu -3' miRNA: 3'- aGAC------CUgCUCCGGCUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 135590 | 0.66 | 0.993017 |
Target: 5'- uUCUGGACGugccucaugucacAGGCgccCGAGGCGUc -3' miRNA: 3'- -AGACCUGC-------------UCCG---GCUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 133223 | 0.69 | 0.942097 |
Target: 5'- gUUGGACGAGGaCGAGAUGg- -3' miRNA: 3'- aGACCUGCUCCgGCUCUGCgu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 130999 | 0.67 | 0.980473 |
Target: 5'- --aGGAgGAGGaaGAGACGCu -3' miRNA: 3'- agaCCUgCUCCggCUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 130221 | 0.83 | 0.312837 |
Target: 5'- cCUGGGCGAGGCCGcGGCGCc -3' miRNA: 3'- aGACCUGCUCCGGCuCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 116460 | 0.7 | 0.926364 |
Target: 5'- cUCcGGACGAGGCCGAauUGCu -3' miRNA: 3'- -AGaCCUGCUCCGGCUcuGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 112361 | 0.66 | 0.988048 |
Target: 5'- -gUGucCGAGGCgGAGGCGCu -3' miRNA: 3'- agACcuGCUCCGgCUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 104556 | 1 | 0.028695 |
Target: 5'- gUCUGGACGAGGCCGAGACGCGg -3' miRNA: 3'- -AGACCUGCUCCGGCUCUGCGU- -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 103406 | 0.67 | 0.978116 |
Target: 5'- uUCUcGGACGAGGCCcugaccGAGAcCGUg -3' miRNA: 3'- -AGA-CCUGCUCCGG------CUCU-GCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 103091 | 0.67 | 0.982636 |
Target: 5'- -gUGGACGcGGCCGGcGCGCc -3' miRNA: 3'- agACCUGCuCCGGCUcUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 95479 | 0.74 | 0.775232 |
Target: 5'- cCUGGugGGGuCCGAGGCGCc -3' miRNA: 3'- aGACCugCUCcGGCUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 95088 | 0.69 | 0.955466 |
Target: 5'- cCUGGGCGuuGGCCGGucccguGACGCu -3' miRNA: 3'- aGACCUGCu-CCGGCU------CUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 94366 | 0.66 | 0.989385 |
Target: 5'- cCUGGAgcaccaucCGGGGCCGugggccgggcaccGGGCGCGg -3' miRNA: 3'- aGACCU--------GCUCCGGC-------------UCUGCGU- -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 90027 | 0.67 | 0.986413 |
Target: 5'- gUCUGGGCGGcGGUCGuGGugGUg -3' miRNA: 3'- -AGACCUGCU-CCGGC-UCugCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 86401 | 0.66 | 0.992051 |
Target: 5'- gUUGGACGGGGagGAG-CGCAu -3' miRNA: 3'- aGACCUGCUCCggCUCuGCGU- -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 82811 | 0.71 | 0.901664 |
Target: 5'- gUCUGGACGAccucaugagcGGCCuGGGCGCc -3' miRNA: 3'- -AGACCUGCU----------CCGGcUCUGCGu -5' |
|||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 78006 | 0.66 | 0.992051 |
Target: 5'- aUCUuGACGcugcuGGCCGAGACgGCGu -3' miRNA: 3'- -AGAcCUGCu----CCGGCUCUG-CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home