miRNA display CGI


Results 1 - 20 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233689 0.66 0.993118
Target:  5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3'
miRNA:   3'- aGACC--------UGCUCCGGCU-CUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233270 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 227411 0.67 0.978116
Target:  5'- --cGGugG-GGCCGGGACGgGg -3'
miRNA:   3'- agaCCugCuCCGGCUCUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 227391 0.67 0.982636
Target:  5'- --gGGACGAGaGCCGGuagggcagcGGCGCAu -3'
miRNA:   3'- agaCCUGCUC-CGGCU---------CUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 221643 0.66 0.988048
Target:  5'- aCUgGGGCGGGcGCgGGGugGCGg -3'
miRNA:   3'- aGA-CCUGCUC-CGgCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 220511 0.76 0.66056
Target:  5'- aCgGGACGuccgcGGCCGGGACGCAg -3'
miRNA:   3'- aGaCCUGCu----CCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 218199 0.66 0.992051
Target:  5'- -aUGGGCGGcGGCCGAcGGCGg- -3'
miRNA:   3'- agACCUGCU-CCGGCU-CUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 216767 0.66 0.993118
Target:  5'- --aGGuaauagcccACGAGGCCGAcGACGUAc -3'
miRNA:   3'- agaCC---------UGCUCCGGCU-CUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 213956 0.67 0.978116
Target:  5'- gCUGGAaggcgaCGAGGaCgGAGGCGCGc -3'
miRNA:   3'- aGACCU------GCUCC-GgCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 213836 0.66 0.990857
Target:  5'- ---cGACGAGGCUGAGAUGa- -3'
miRNA:   3'- agacCUGCUCCGGCUCUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 201818 0.72 0.856942
Target:  5'- gUCUGuGACGGGGCCGuuuGGaACGCGu -3'
miRNA:   3'- -AGAC-CUGCUCCGGC---UC-UGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 197269 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 196849 0.66 0.993118
Target:  5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3'
miRNA:   3'- aGACC--------UGCUCCGGCU-CUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 171882 0.68 0.963111
Target:  5'- gCUGGugGGGGUCGgcuuguuaagagGGGCGCu -3'
miRNA:   3'- aGACCugCUCCGGC------------UCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 164714 0.66 0.989526
Target:  5'- cCUGGACGccuGGgCGcGACGCGg -3'
miRNA:   3'- aGACCUGCu--CCgGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 163492 0.75 0.692726
Target:  5'- aCUGcGAgGAGGCUGAGGCGCc -3'
miRNA:   3'- aGAC-CUgCUCCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 162362 0.68 0.969789
Target:  5'- -gUGGugGAGGCgGcGGCGCu -3'
miRNA:   3'- agACCugCUCCGgCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 159344 0.73 0.81341
Target:  5'- cUCUGGAgGAGGCaCGGcGGCGCu -3'
miRNA:   3'- -AGACCUgCUCCG-GCU-CUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 153359 0.68 0.966567
Target:  5'- cUUGGGCGuGGGCCGcGGCGUg -3'
miRNA:   3'- aGACCUGC-UCCGGCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 151984 0.71 0.894834
Target:  5'- --cGGGCGccgccGGGCCGGGugGCGg -3'
miRNA:   3'- agaCCUGC-----UCCGGCUCugCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.