miRNA display CGI


Results 1 - 20 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 33925 0.69 0.945426
Target:  5'- cCUGGACGGGGCCacgucgccggcuguGAgGugGCGg -3'
miRNA:   3'- aGACCUGCUCCGG--------------CU-CugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 37208 0.66 0.992051
Target:  5'- gUUUGcGACGcGGCCGAcGCGCGu -3'
miRNA:   3'- -AGAC-CUGCuCCGGCUcUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 46900 0.79 0.477911
Target:  5'- gCUGGGgugcgcgcgucuccCGAGGCCGAGGCGCGc -3'
miRNA:   3'- aGACCU--------------GCUCCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 51531 0.72 0.865001
Target:  5'- cUCUcGACgGAGGCCGGGACGaCAg -3'
miRNA:   3'- -AGAcCUG-CUCCGGCUCUGC-GU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 63754 0.72 0.840153
Target:  5'- gUCUGGcGCGuGGCCG-GGCGCGc -3'
miRNA:   3'- -AGACC-UGCuCCGGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 65174 0.66 0.990075
Target:  5'- gCUGGAUguggcgaccguaccaGAGGCUGAGAuCGCc -3'
miRNA:   3'- aGACCUG---------------CUCCGGCUCU-GCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 72292 0.67 0.980473
Target:  5'- gCUGccGAUGAGGCCGccGCGCAg -3'
miRNA:   3'- aGAC--CUGCUCCGGCucUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 94366 0.66 0.989385
Target:  5'- cCUGGAgcaccaucCGGGGCCGugggccgggcaccGGGCGCGg -3'
miRNA:   3'- aGACCU--------GCUCCGGC-------------UCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 95088 0.69 0.955466
Target:  5'- cCUGGGCGuuGGCCGGucccguGACGCu -3'
miRNA:   3'- aGACCUGCu-CCGGCU------CUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 112361 0.66 0.988048
Target:  5'- -gUGucCGAGGCgGAGGCGCu -3'
miRNA:   3'- agACcuGCUCCGgCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 116460 0.7 0.926364
Target:  5'- cUCcGGACGAGGCCGAauUGCu -3'
miRNA:   3'- -AGaCCUGCUCCGGCUcuGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 130221 0.83 0.312837
Target:  5'- cCUGGGCGAGGCCGcGGCGCc -3'
miRNA:   3'- aGACCUGCUCCGGCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 130999 0.67 0.980473
Target:  5'- --aGGAgGAGGaaGAGACGCu -3'
miRNA:   3'- agaCCUgCUCCggCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 133223 0.69 0.942097
Target:  5'- gUUGGACGAGGaCGAGAUGg- -3'
miRNA:   3'- aGACCUGCUCCgGCUCUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 135974 0.73 0.794648
Target:  5'- gCUGaguaacGAgGAGGCCGAGACGCu -3'
miRNA:   3'- aGAC------CUgCUCCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 141870 0.67 0.984612
Target:  5'- aUCUGaugaccGACGAGGCCGGcGGCgGCGu -3'
miRNA:   3'- -AGAC------CUGCUCCGGCU-CUG-CGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 143369 0.69 0.955466
Target:  5'- gUCUGGACGAGGugcgcauggguaCgGAGGCGUu -3'
miRNA:   3'- -AGACCUGCUCC------------GgCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 151984 0.71 0.894834
Target:  5'- --cGGGCGccgccGGGCCGGGugGCGg -3'
miRNA:   3'- agaCCUGC-----UCCGGCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 159344 0.73 0.81341
Target:  5'- cUCUGGAgGAGGCaCGGcGGCGCu -3'
miRNA:   3'- -AGACCUgCUCCG-GCU-CUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 162362 0.68 0.969789
Target:  5'- -gUGGugGAGGCgGcGGCGCu -3'
miRNA:   3'- agACCugCUCCGgCuCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.