miRNA display CGI


Results 1 - 20 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 104556 1 0.028695
Target:  5'- gUCUGGACGAGGCCGAGACGCGg -3'
miRNA:   3'- -AGACCUGCUCCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 52619 0.93 0.076016
Target:  5'- gCUGGACGAGGCCGAGugGCGa -3'
miRNA:   3'- aGACCUGCUCCGGCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 130221 0.83 0.312837
Target:  5'- cCUGGGCGAGGCCGcGGCGCc -3'
miRNA:   3'- aGACCUGCUCCGGCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 46900 0.79 0.477911
Target:  5'- gCUGGGgugcgcgcgucuccCGAGGCCGAGGCGCGc -3'
miRNA:   3'- aGACCU--------------GCUCCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 220511 0.76 0.66056
Target:  5'- aCgGGACGuccgcGGCCGGGACGCAg -3'
miRNA:   3'- aGaCCUGCu----CCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 163492 0.75 0.692726
Target:  5'- aCUGcGAgGAGGCUGAGGCGCc -3'
miRNA:   3'- aGAC-CUgCUCCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 95479 0.74 0.775232
Target:  5'- cCUGGugGGGuCCGAGGCGCc -3'
miRNA:   3'- aGACCugCUCcGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 135974 0.73 0.794648
Target:  5'- gCUGaguaacGAgGAGGCCGAGACGCu -3'
miRNA:   3'- aGAC------CUgCUCCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 159344 0.73 0.81341
Target:  5'- cUCUGGAgGAGGCaCGGcGGCGCu -3'
miRNA:   3'- -AGACCUgCUCCG-GCU-CUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 63754 0.72 0.840153
Target:  5'- gUCUGGcGCGuGGCCG-GGCGCGc -3'
miRNA:   3'- -AGACC-UGCuCCGGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 201818 0.72 0.856942
Target:  5'- gUCUGuGACGGGGCCGuuuGGaACGCGu -3'
miRNA:   3'- -AGAC-CUGCUCCGGC---UC-UGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 51531 0.72 0.865001
Target:  5'- cUCUcGACgGAGGCCGGGACGaCAg -3'
miRNA:   3'- -AGAcCUG-CUCCGGCUCUGC-GU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 151984 0.71 0.894834
Target:  5'- --cGGGCGccgccGGGCCGGGugGCGg -3'
miRNA:   3'- agaCCUGC-----UCCGGCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 82811 0.71 0.901664
Target:  5'- gUCUGGACGAccucaugagcGGCCuGGGCGCc -3'
miRNA:   3'- -AGACCUGCU----------CCGGcUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 116460 0.7 0.926364
Target:  5'- cUCcGGACGAGGCCGAauUGCu -3'
miRNA:   3'- -AGaCCUGCUCCGGCUcuGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233270 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 197269 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 133223 0.69 0.942097
Target:  5'- gUUGGACGAGGaCGAGAUGg- -3'
miRNA:   3'- aGACCUGCUCCgGCUCUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 33925 0.69 0.945426
Target:  5'- cCUGGACGGGGCCacgucgccggcuguGAgGugGCGg -3'
miRNA:   3'- aGACCUGCUCCGG--------------CU-CugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 35521 0.69 0.951268
Target:  5'- gCUGGuuaaGuuGGCCGAGACGCu -3'
miRNA:   3'- aGACCug--Cu-CCGGCUCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.