Results 1 - 20 of 55 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 135590 | 0.66 | 0.993017 |
Target: 5'- uUCUGGACGugccucaugucacAGGCgccCGAGGCGUc -3' miRNA: 3'- -AGACCUGC-------------UCCG---GCUCUGCGu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 196849 | 0.66 | 0.993118 |
Target: 5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3' miRNA: 3'- aGACC--------UGCUCCGGCU-CUGCgU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 78006 | 0.66 | 0.992051 |
Target: 5'- aUCUuGACGcugcuGGCCGAGACgGCGu -3' miRNA: 3'- -AGAcCUGCu----CCGGCUCUG-CGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 233689 | 0.66 | 0.993118 |
Target: 5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3' miRNA: 3'- aGACC--------UGCUCCGGCU-CUGCgU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 146251 | 0.66 | 0.989526 |
Target: 5'- cCUGGACGGGGgggaCCGGGG-GCGg -3' miRNA: 3'- aGACCUGCUCC----GGCUCUgCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 164714 | 0.66 | 0.989526 |
Target: 5'- cCUGGACGccuGGgCGcGACGCGg -3' miRNA: 3'- aGACCUGCu--CCgGCuCUGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 32152 | 0.66 | 0.993118 |
Target: 5'- gUCgGGAC-AGGCCaGcAGACGCAg -3' miRNA: 3'- -AGaCCUGcUCCGG-C-UCUGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 213836 | 0.66 | 0.990857 |
Target: 5'- ---cGACGAGGCUGAGAUGa- -3' miRNA: 3'- agacCUGCUCCGGCUCUGCgu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 86401 | 0.66 | 0.992051 |
Target: 5'- gUUGGACGGGGagGAG-CGCAu -3' miRNA: 3'- aGACCUGCUCCggCUCuGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 35667 | 0.66 | 0.988048 |
Target: 5'- -gUGGcCGAGGCCGAcGAgGCc -3' miRNA: 3'- agACCuGCUCCGGCU-CUgCGu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 112361 | 0.66 | 0.988048 |
Target: 5'- -gUGucCGAGGCgGAGGCGCu -3' miRNA: 3'- agACcuGCUCCGgCUCUGCGu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 37208 | 0.66 | 0.992051 |
Target: 5'- gUUUGcGACGcGGCCGAcGCGCGu -3' miRNA: 3'- -AGAC-CUGCuCCGGCUcUGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 216767 | 0.66 | 0.993118 |
Target: 5'- --aGGuaauagcccACGAGGCCGAcGACGUAc -3' miRNA: 3'- agaCC---------UGCUCCGGCU-CUGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 218199 | 0.66 | 0.992051 |
Target: 5'- -aUGGGCGGcGGCCGAcGGCGg- -3' miRNA: 3'- agACCUGCU-CCGGCU-CUGCgu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 65174 | 0.66 | 0.990075 |
Target: 5'- gCUGGAUguggcgaccguaccaGAGGCUGAGAuCGCc -3' miRNA: 3'- aGACCUG---------------CUCCGGCUCU-GCGu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 94366 | 0.66 | 0.989385 |
Target: 5'- cCUGGAgcaccaucCGGGGCCGugggccgggcaccGGGCGCGg -3' miRNA: 3'- aGACCU--------GCUCCGGC-------------UCUGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 221643 | 0.66 | 0.988048 |
Target: 5'- aCUgGGGCGGGcGCgGGGugGCGg -3' miRNA: 3'- aGA-CCUGCUC-CGgCUCugCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 72292 | 0.67 | 0.980473 |
Target: 5'- gCUGccGAUGAGGCCGccGCGCAg -3' miRNA: 3'- aGAC--CUGCUCCGGCucUGCGU- -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | + | 130999 | 0.67 | 0.980473 |
Target: 5'- --aGGAgGAGGaaGAGACGCu -3' miRNA: 3'- agaCCUgCUCCggCUCUGCGu -5' |
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MIMAT0003342 | hcmv-miR-UL70-5p | -50.8 | NC_006273.1 | - | 103091 | 0.67 | 0.982636 |
Target: 5'- -gUGGACGcGGCCGGcGCGCc -3' miRNA: 3'- agACCUGCuCCGGCUcUGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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