miRNA display CGI


Results 1 - 20 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233689 0.66 0.993118
Target:  5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3'
miRNA:   3'- aGACC--------UGCUCCGGCU-CUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233270 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 227411 0.67 0.978116
Target:  5'- --cGGugG-GGCCGGGACGgGg -3'
miRNA:   3'- agaCCugCuCCGGCUCUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 227391 0.67 0.982636
Target:  5'- --gGGACGAGaGCCGGuagggcagcGGCGCAu -3'
miRNA:   3'- agaCCUGCUC-CGGCU---------CUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 221643 0.66 0.988048
Target:  5'- aCUgGGGCGGGcGCgGGGugGCGg -3'
miRNA:   3'- aGA-CCUGCUC-CGgCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 220511 0.76 0.66056
Target:  5'- aCgGGACGuccgcGGCCGGGACGCAg -3'
miRNA:   3'- aGaCCUGCu----CCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 201818 0.72 0.856942
Target:  5'- gUCUGuGACGGGGCCGuuuGGaACGCGu -3'
miRNA:   3'- -AGAC-CUGCUCCGGC---UC-UGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 164714 0.66 0.989526
Target:  5'- cCUGGACGccuGGgCGcGACGCGg -3'
miRNA:   3'- aGACCUGCu--CCgGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 163492 0.75 0.692726
Target:  5'- aCUGcGAgGAGGCUGAGGCGCc -3'
miRNA:   3'- aGAC-CUgCUCCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 153359 0.68 0.966567
Target:  5'- cUUGGGCGuGGGCCGcGGCGUg -3'
miRNA:   3'- aGACCUGC-UCCGGCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 146251 0.66 0.989526
Target:  5'- cCUGGACGGGGgggaCCGGGG-GCGg -3'
miRNA:   3'- aGACCUGCUCC----GGCUCUgCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 135590 0.66 0.993017
Target:  5'- uUCUGGACGugccucaugucacAGGCgccCGAGGCGUc -3'
miRNA:   3'- -AGACCUGC-------------UCCG---GCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 104556 1 0.028695
Target:  5'- gUCUGGACGAGGCCGAGACGCGg -3'
miRNA:   3'- -AGACCUGCUCCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 103406 0.67 0.978116
Target:  5'- uUCUcGGACGAGGCCcugaccGAGAcCGUg -3'
miRNA:   3'- -AGA-CCUGCUCCGG------CUCU-GCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 103091 0.67 0.982636
Target:  5'- -gUGGACGcGGCCGGcGCGCc -3'
miRNA:   3'- agACCUGCuCCGGCUcUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 95479 0.74 0.775232
Target:  5'- cCUGGugGGGuCCGAGGCGCc -3'
miRNA:   3'- aGACCugCUCcGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 90027 0.67 0.986413
Target:  5'- gUCUGGGCGGcGGUCGuGGugGUg -3'
miRNA:   3'- -AGACCUGCU-CCGGC-UCugCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 86401 0.66 0.992051
Target:  5'- gUUGGACGGGGagGAG-CGCAu -3'
miRNA:   3'- aGACCUGCUCCggCUCuGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 82811 0.71 0.901664
Target:  5'- gUCUGGACGAccucaugagcGGCCuGGGCGCc -3'
miRNA:   3'- -AGACCUGCU----------CCGGcUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 78006 0.66 0.992051
Target:  5'- aUCUuGACGcugcuGGCCGAGACgGCGu -3'
miRNA:   3'- -AGAcCUGCu----CCGGCUCUG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.