Results 1 - 20 of 21 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 139178 | 1.01 | 0.025401 |
Target: 5'- gACACCUGGUGACUAGUGGUGCGc -3' miRNA: 3'- -UGUGGACCACUGAUCACCACGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 158600 | 0.76 | 0.687516 |
Target: 5'- uGCACCgUGGUGGCgGGgGGUGCGg -3' miRNA: 3'- -UGUGG-ACCACUGaUCaCCACGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 10964 | 0.75 | 0.720204 |
Target: 5'- -gGCCgGGUGACUGGUGGgggGCa -3' miRNA: 3'- ugUGGaCCACUGAUCACCa--CGc -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 137204 | 0.73 | 0.821575 |
Target: 5'- -uGCCUGGUGAgaagUUGGUGGUGgGg -3' miRNA: 3'- ugUGGACCACU----GAUCACCACgC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 65290 | 0.72 | 0.873383 |
Target: 5'- -uGCCUGGUGAaugcgccuCUGGcGGUGCGg -3' miRNA: 3'- ugUGGACCACU--------GAUCaCCACGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 113009 | 0.7 | 0.933677 |
Target: 5'- cACAUCUGGaccugGACUGG-GGUGUGa -3' miRNA: 3'- -UGUGGACCa----CUGAUCaCCACGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 49124 | 0.7 | 0.93898 |
Target: 5'- cCACCUGGUGAgcGGU-GUGCGg -3' miRNA: 3'- uGUGGACCACUgaUCAcCACGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 77592 | 0.7 | 0.928093 |
Target: 5'- -gGCCUGacgcuUGGCUGGUGGUGCc -3' miRNA: 3'- ugUGGACc----ACUGAUCACCACGc -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 156664 | 0.69 | 0.953215 |
Target: 5'- uGguCCUGGUGGCgggGGUGGUGa- -3' miRNA: 3'- -UguGGACCACUGa--UCACCACgc -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 139321 | 0.69 | 0.953215 |
Target: 5'- gACACCUGGUGcCUAcGUGauGUGCu -3' miRNA: 3'- -UGUGGACCACuGAU-CAC--CACGc -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 85477 | 0.68 | 0.974564 |
Target: 5'- aGCACCUgaggaGGUGGCgugggAGUGG-GCGc -3' miRNA: 3'- -UGUGGA-----CCACUGa----UCACCaCGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 85417 | 0.68 | 0.971623 |
Target: 5'- gGCACCUgaggaGGUGGCgugggAGUGG-GCGc -3' miRNA: 3'- -UGUGGA-----CCACUGa----UCACCaCGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | - | 85357 | 0.67 | 0.984138 |
Target: 5'- gGCACCucaggUGGUGACaugggAGUGG-GCGc -3' miRNA: 3'- -UGUGG-----ACCACUGa----UCACCaCGC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 111894 | 0.66 | 0.991937 |
Target: 5'- cACACCUGGUGA--GGUG-UGCc -3' miRNA: 3'- -UGUGGACCACUgaUCACcACGc -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 14890 | 0.66 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 33303 | 0.66 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 30234 | 0.66 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 27165 | 0.66 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 24096 | 0.66 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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MIMAT0003411 | ebv-miR-BART3-3p | -49.4 | NC_007605.1 | + | 21027 | 0.66 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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