Results 21 - 34 of 34 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 120233 | 0.66 | 0.982107 |
Target: 5'- cGCAUACUGGCccugGGCAgcaGGGUCa -3' miRNA: 3'- uCGUGUGGUCG----UCGUag-UCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 123425 | 0.68 | 0.927422 |
Target: 5'- gGGUGCAgcuCCAGCcGCAgCAGGUCa -3' miRNA: 3'- -UCGUGU---GGUCGuCGUaGUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 133444 | 0.66 | 0.979804 |
Target: 5'- aGGC-CACUA-CAGCAUcCAGGUCc -3' miRNA: 3'- -UCGuGUGGUcGUCGUA-GUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 134706 | 0.7 | 0.871814 |
Target: 5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3' miRNA: 3'- uCGUGUGGUcGUCGUA------GUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 139282 | 1.02 | 0.015826 |
Target: 5'- cAGCACACCAGCAGCAUCAGGUCc -3' miRNA: 3'- -UCGUGUGGUCGUCGUAGUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 147748 | 0.67 | 0.964895 |
Target: 5'- uGGCGCucccucauCCAGCGGCA-CAGGa- -3' miRNA: 3'- -UCGUGu-------GGUCGUCGUaGUCCag -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 153607 | 0.69 | 0.92388 |
Target: 5'- gAGCACgcGCCGGCAGCGUgucugcacaaacuugCAGGcCg -3' miRNA: 3'- -UCGUG--UGGUCGUCGUA---------------GUCCaG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 155175 | 0.69 | 0.915212 |
Target: 5'- cAGgAUAUCuGCAGgAUCAGGUCa -3' miRNA: 3'- -UCgUGUGGuCGUCgUAGUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 164371 | 0.66 | 0.982107 |
Target: 5'- cAGCACGaaGGCGGCGcUCuuguGGUCa -3' miRNA: 3'- -UCGUGUggUCGUCGU-AGu---CCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 166525 | 0.66 | 0.984206 |
Target: 5'- cGCugGCUGGUgGGCAUCGGaGUCg -3' miRNA: 3'- uCGugUGGUCG-UCGUAGUC-CAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 169559 | 0.71 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 170096 | 0.71 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 170619 | 0.71 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 171156 | 0.71 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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