Results 21 - 34 of 34 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 77788 | 0.75 | 0.604747 |
Target: 5'- aGGCAcCACCAGCcaAGCGUCAGGcCc -3' miRNA: 3'- -UCGU-GUGGUCG--UCGUAGUCCaG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 77136 | 0.72 | 0.779849 |
Target: 5'- aGGCGCaguccgccaugACCAGCAGCAgcagaaGGGUCa -3' miRNA: 3'- -UCGUG-----------UGGUCGUCGUag----UCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 76450 | 0.71 | 0.837642 |
Target: 5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3' miRNA: 3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 73576 | 0.66 | 0.971575 |
Target: 5'- cGCGCGCUGGCAcGCGgaugaGGGUCc -3' miRNA: 3'- uCGUGUGGUCGU-CGUag---UCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 68075 | 0.73 | 0.705367 |
Target: 5'- gGGCACGCCAGCAagGC-UCAGG-Cg -3' miRNA: 3'- -UCGUGUGGUCGU--CGuAGUCCaG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 62747 | 0.68 | 0.948393 |
Target: 5'- cGCAgGCgGGCAGCG--GGGUCg -3' miRNA: 3'- uCGUgUGgUCGUCGUagUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 59556 | 0.67 | 0.957185 |
Target: 5'- cGGCACGCCaccugccguggGGCGGUGgugaCAGGUCc -3' miRNA: 3'- -UCGUGUGG-----------UCGUCGUa---GUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 55340 | 0.69 | 0.921461 |
Target: 5'- aGGCGCGCUGGCuccAGCGUCAgccGGUUg -3' miRNA: 3'- -UCGUGUGGUCG---UCGUAGU---CCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 48955 | 0.69 | 0.915212 |
Target: 5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3' miRNA: 3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 44969 | 0.77 | 0.49533 |
Target: 5'- uGGCACAuCCAGCAGCGUguuuUGGGUCu -3' miRNA: 3'- -UCGUGU-GGUCGUCGUA----GUCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 6250 | 0.66 | 0.982107 |
Target: 5'- gGGCACACacucaAGCGGgGUCucggagcuccuAGGUCa -3' miRNA: 3'- -UCGUGUGg----UCGUCgUAG-----------UCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | + | 4331 | 0.7 | 0.87973 |
Target: 5'- gGGCAguCCAGCAGCu---GGUCa -3' miRNA: 3'- -UCGUguGGUCGUCGuaguCCAG- -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 3876 | 0.68 | 0.93848 |
Target: 5'- uAGUcCGCCAGCGGCAggucCAGGg- -3' miRNA: 3'- -UCGuGUGGUCGUCGUa---GUCCag -5' |
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MIMAT0003412 | ebv-miR-BART4 | -50.3 | NC_007605.1 | - | 2103 | 0.69 | 0.901857 |
Target: 5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3' miRNA: 3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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