Results 1 - 6 of 6 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003413 | ebv-miR-BART5 | -48.5 | NC_007605.1 | - | 154717 | 0.7 | 0.967641 |
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Target: 5'- aCGAUGGGCAGCagauccgcGUGUUCuCCUg- -3' miRNA: 3'- -GCUACCCGUCGa-------UAUAAGuGGAac -5' |
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| MIMAT0003413 | ebv-miR-BART5 | -48.5 | NC_007605.1 | - | 147935 | 0.69 | 0.970893 |
|
Target: 5'- uGAUGGGCGGgUGUuaggUCACCa-- -3' miRNA: 3'- gCUACCCGUCgAUAua--AGUGGaac -5' |
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| MIMAT0003413 | ebv-miR-BART5 | -48.5 | NC_007605.1 | - | 139731 | 1.02 | 0.028584 |
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Target: 5'- uCGAUGGGCAGCUAUAUUCACCUUGa -3' miRNA: 3'- -GCUACCCGUCGAUAUAAGUGGAAC- -5' |
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| MIMAT0003413 | ebv-miR-BART5 | -48.5 | NC_007605.1 | + | 139575 | 0.72 | 0.893707 |
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Target: 5'- cCGGUGGGCcGCUGU--UCACCUa- -3' miRNA: 3'- -GCUACCCGuCGAUAuaAGUGGAac -5' |
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| MIMAT0003413 | ebv-miR-BART5 | -48.5 | NC_007605.1 | + | 109497 | 0.66 | 0.997342 |
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Target: 5'- aGAUGGG-AGCUGgcucaaaCACCUUGg -3' miRNA: 3'- gCUACCCgUCGAUauaa---GUGGAAC- -5' |
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| MIMAT0003413 | ebv-miR-BART5 | -48.5 | NC_007605.1 | - | 101472 | 0.67 | 0.994759 |
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Target: 5'- ---gGGGCAGCUAUGgacCACCa-- -3' miRNA: 3'- gcuaCCCGUCGAUAUaa-GUGGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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