miRNA display CGI


Results 1 - 20 of 52 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 151693 0.66 0.99985
Target:  5'- cAGGCCUggcggGUGGAgauagGGACCAGa- -3'
miRNA:   3'- -UUCGGA-----UACCUaa---CCUGGUUgg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 81556 0.66 0.99985
Target:  5'- gGGGCCUGUgcuaccGGAcacgGGGCCAuGCCg -3'
miRNA:   3'- -UUCGGAUA------CCUaa--CCUGGU-UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 84650 0.66 0.99985
Target:  5'- cGAGCC--UGGAcacucagUGGGCCGACg -3'
miRNA:   3'- -UUCGGauACCUa------ACCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 63332 0.66 0.999804
Target:  5'- gGGGCCUGacgcGGA-UGG-CCAACCu -3'
miRNA:   3'- -UUCGGAUa---CCUaACCuGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 52292 0.66 0.999804
Target:  5'- cGGGCCguacuuUGGuugUGGACCAGgCCc -3'
miRNA:   3'- -UUCGGau----ACCua-ACCUGGUU-GG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 62366 0.66 0.999804
Target:  5'- aAGGCaaagGUGGccGUUGGGCCAgagACCg -3'
miRNA:   3'- -UUCGga--UACC--UAACCUGGU---UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 83859 0.66 0.999804
Target:  5'- -uGCUaUAUGGAUUGGGCUgggcacgaaaAACCg -3'
miRNA:   3'- uuCGG-AUACCUAACCUGG----------UUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 104453 0.66 0.999744
Target:  5'- uAGCCgggGUGGA--GGGCCGAUa -3'
miRNA:   3'- uUCGGa--UACCUaaCCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 104119 0.66 0.999744
Target:  5'- gAGGCCUAUGGAg-GGGCUcuuGGCa -3'
miRNA:   3'- -UUCGGAUACCUaaCCUGG---UUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 128217 0.66 0.999744
Target:  5'- cAAGUCc--GGAUUGGgcACCAGCCu -3'
miRNA:   3'- -UUCGGauaCCUAACC--UGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 61260 0.66 0.999744
Target:  5'- gGAGCCg--GGGccgGGGCCuGCCa -3'
miRNA:   3'- -UUCGGauaCCUaa-CCUGGuUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 148921 0.66 0.999744
Target:  5'- gAGGCCUG-GGAggGGGCgAGCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGgUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 91378 0.67 0.999577
Target:  5'- cAGCCauaUGUGGAcagaUGGACCugAGCCa -3'
miRNA:   3'- uUCGG---AUACCUa---ACCUGG--UUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 2934 0.67 0.999577
Target:  5'- cAGCC-AUGGAgcGGACUGACg -3'
miRNA:   3'- uUCGGaUACCUaaCCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 59717 0.67 0.999577
Target:  5'- aGGGCCggcacgaggugGUGGGUcUGGACCcgGGCCg -3'
miRNA:   3'- -UUCGGa----------UACCUA-ACCUGG--UUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 44658 0.67 0.999463
Target:  5'- aAGGCC-GUGGAUgcgcaGGACCAcguCCa -3'
miRNA:   3'- -UUCGGaUACCUAa----CCUGGUu--GG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 80470 0.67 0.999322
Target:  5'- uGGCCUAUGGGUU--ACCAGgCa -3'
miRNA:   3'- uUCGGAUACCUAAccUGGUUgG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 114293 0.67 0.999322
Target:  5'- -uGCCUGUGGAgauuaGGGgUAACCc -3'
miRNA:   3'- uuCGGAUACCUaa---CCUgGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 37273 0.67 0.999151
Target:  5'- cAAGCCcgGUGGAccUUGGAgaCCAgaGCCa -3'
miRNA:   3'- -UUCGGa-UACCU--AACCU--GGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 26812 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.