miRNA display CGI


Results 1 - 20 of 52 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 151693 0.66 0.99985
Target:  5'- cAGGCCUggcggGUGGAgauagGGACCAGa- -3'
miRNA:   3'- -UUCGGA-----UACCUaa---CCUGGUUgg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 148921 0.66 0.999744
Target:  5'- gAGGCCUG-GGAggGGGCgAGCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGgUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 143699 0.69 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 140089 1.03 0.041736
Target:  5'- aAAGCCUAUGGAUUGGACCAACCu -3'
miRNA:   3'- -UUCGGAUACCUAACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 137282 0.68 0.997631
Target:  5'- -cGCCUcagGGAUcgUGGACuCGGCCa -3'
miRNA:   3'- uuCGGAua-CCUA--ACCUG-GUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 128217 0.66 0.999744
Target:  5'- cAAGUCc--GGAUUGGgcACCAGCCu -3'
miRNA:   3'- -UUCGGauaCCUAACC--UGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 114293 0.67 0.999322
Target:  5'- -uGCCUGUGGAgauuaGGGgUAACCc -3'
miRNA:   3'- uuCGGAUACCUaa---CCUgGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 104963 0.73 0.9604
Target:  5'- gAAGCCUcuccUGGAcccUGGACCAACUa -3'
miRNA:   3'- -UUCGGAu---ACCUa--ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 104119 0.66 0.999744
Target:  5'- gAGGCCUAUGGAg-GGGCUcuuGGCa -3'
miRNA:   3'- -UUCGGAUACCUaaCCUGG---UUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 91378 0.67 0.999577
Target:  5'- cAGCCauaUGUGGAcagaUGGACCugAGCCa -3'
miRNA:   3'- uUCGG---AUACCUa---ACCUGG--UUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 84650 0.66 0.99985
Target:  5'- cGAGCC--UGGAcacucagUGGGCCGACg -3'
miRNA:   3'- -UUCGGauACCUa------ACCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 82743 0.68 0.997145
Target:  5'- gGGGCCUGaGGGcaGGGCCuGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGGuUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 81556 0.66 0.99985
Target:  5'- gGGGCCUGUgcuaccGGAcacgGGGCCAuGCCg -3'
miRNA:   3'- -UUCGGAUA------CCUaa--CCUGGU-UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 75724 0.69 0.994305
Target:  5'- -cGCCgggGUGGggUGGACguCAGCCu -3'
miRNA:   3'- uuCGGa--UACCuaACCUG--GUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 40883 0.69 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 126442 0.68 0.998695
Target:  5'- cAGUCUAUucuuuacggacgGGGUggGGGCCAACCu -3'
miRNA:   3'- uUCGGAUA------------CCUAa-CCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 104453 0.66 0.999744
Target:  5'- uAGCCgggGUGGA--GGGCCGAUa -3'
miRNA:   3'- uUCGGa--UACCUaaCCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 83859 0.66 0.999804
Target:  5'- -uGCUaUAUGGAUUGGGCUgggcacgaaaAACCg -3'
miRNA:   3'- uuCGG-AUACCUAACCUGG----------UUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 80470 0.67 0.999322
Target:  5'- uGGCCUAUGGGUU--ACCAGgCa -3'
miRNA:   3'- uUCGGAUACCUAAccUGGUUgG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 65519 0.73 0.956249
Target:  5'- uGGGCCUcgGGGUgcaGGGCCuGGCCg -3'
miRNA:   3'- -UUCGGAuaCCUAa--CCUGG-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.