miRNA display CGI


Results 1 - 20 of 27 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 108465 0.66 0.999252
Target:  5'- aCCUUGGccggugGCugUGGACUggGGUGc -3'
miRNA:   3'- -GGGACC------UGugACCUGAuaCUAC- -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 + 115045 0.67 0.998247
Target:  5'- gCCCUGGGCACucagcucUGGAUaUGUGAc- -3'
miRNA:   3'- -GGGACCUGUG-------ACCUG-AUACUac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 125587 0.67 0.997916
Target:  5'- aCCCUGGGCACcgGGAg-GUGGg- -3'
miRNA:   3'- -GGGACCUGUGa-CCUgaUACUac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 + 146291 0.68 0.994108
Target:  5'- aUCCUGGAC-CUuGACUAUGAa- -3'
miRNA:   3'- -GGGACCUGuGAcCUGAUACUac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 + 99653 0.69 0.986017
Target:  5'- aCCCUGGGCcUUGG-CUAUGGUc -3'
miRNA:   3'- -GGGACCUGuGACCuGAUACUAc -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 23188 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 29326 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 20120 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 17051 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 32395 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 13982 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 35464 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 26257 0.7 0.974317
Target:  5'- cCCCUGGACAuCUGGACa------ -3'
miRNA:   3'- -GGGACCUGU-GACCUGauacuac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 73159 0.71 0.960777
Target:  5'- cCCCUGGuCGCUGGAggaaauCUAUGAc- -3'
miRNA:   3'- -GGGACCuGUGACCU------GAUACUac -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 113006 0.72 0.942961
Target:  5'- aUCUGGAC-CUGGACUggGGUGu -3'
miRNA:   3'- gGGACCUGuGACCUGAuaCUAC- -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 26113 0.72 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 29181 0.72 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 16906 0.72 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 13837 0.72 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5'
MIMAT0003416 ebv-miR-BART7 -47.3 NC_007605.1 - 23044 0.72 0.937798
Target:  5'- cCCCUGGACg--GGACUggGGUGg -3'
miRNA:   3'- -GGGACCUGugaCCUGAuaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.