Results 1 - 19 of 19 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 82587 | 0.66 | 0.999954 |
Target: 5'- --cCGGGAUgguuaagaCCAUGGAGUGUa- -3' miRNA: 3'- gauGCCCUG--------GGUACUUCACAau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 81538 | 0.66 | 0.999954 |
Target: 5'- -cACGGGGCC-AUGccGUGUUGu -3' miRNA: 3'- gaUGCCCUGGgUACuuCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 4477 | 0.66 | 0.999967 |
Target: 5'- cCU-CGGGuGCCCGUGggGUcGUg- -3' miRNA: 3'- -GAuGCCC-UGGGUACuuCA-CAau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | + | 40308 | 0.67 | 0.999853 |
Target: 5'- ---aGGGGCCCGgcgGggGUGggGg -3' miRNA: 3'- gaugCCCUGGGUa--CuuCACaaU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 88293 | 0.67 | 0.999742 |
Target: 5'- -gAUGGGGCCCAUGAugggcgaGGcGUUGu -3' miRNA: 3'- gaUGCCCUGGGUACU-------UCaCAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 33240 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 30171 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 27103 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 24034 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 20965 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | + | 71867 | 0.67 | 0.999889 |
Target: 5'- cCUGCGGGAUCCucguUGGAGg---- -3' miRNA: 3'- -GAUGCCCUGGGu---ACUUCacaau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 14827 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 17896 | 0.67 | 0.999749 |
Target: 5'- --cUGGGugUgGUGGAGUGUUGg -3' miRNA: 3'- gauGCCCugGgUACUUCACAAU- -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 41508 | 0.69 | 0.998644 |
Target: 5'- -gGCGGGGCUCAUGGauuagcaggggcuuAGUGUg- -3' miRNA: 3'- gaUGCCCUGGGUACU--------------UCACAau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 144324 | 0.69 | 0.998644 |
Target: 5'- -gGCGGGGCUCAUGGauuagcaggggcuuAGUGUg- -3' miRNA: 3'- gaUGCCCUGGGUACU--------------UCACAau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 151035 | 0.69 | 0.998968 |
Target: 5'- -aGCGGG-CCCAUGAAGg---- -3' miRNA: 3'- gaUGCCCuGGGUACUUCacaau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | + | 137563 | 0.72 | 0.986552 |
Target: 5'- cCUAUGGGGCCUGUGAcuggugcuuguGGUGUg- -3' miRNA: 3'- -GAUGCCCUGGGUACU-----------UCACAau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | + | 57994 | 0.74 | 0.953045 |
Target: 5'- -aGCgGGGACCCcgGggGUGUg- -3' miRNA: 3'- gaUG-CCCUGGGuaCuuCACAau -5' |
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MIMAT0003419 | ebv-miR-BART9 | -45.2 | NC_007605.1 | - | 147043 | 1.02 | 0.062184 |
Target: 5'- aCUACGGGACCCAUGAAGUGUUAc -3' miRNA: 3'- -GAUGCCCUGGGUACUUCACAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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