Results 21 - 25 of 25 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 102754 | 0.67 | 0.999867 |
Target: 5'- -aGGCgc-UGCACCGGGCUGUCg -3' miRNA: 3'- ugUUGaucGCGUGGUUUGACAG- -5' |
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MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 10698 | 0.67 | 0.9999 |
Target: 5'- aACAGCUAGUGUACUuuuguAGGCUG-Ca -3' miRNA: 3'- -UGUUGAUCGCGUGG-----UUUGACaG- -5' |
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MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | + | 126020 | 0.66 | 0.999971 |
Target: 5'- ----gUGGgGCACCAggAGCUGUCu -3' miRNA: 3'- uguugAUCgCGUGGU--UUGACAG- -5' |
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MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 150170 | 0.66 | 0.999971 |
Target: 5'- uGCAGCUGGaCGCGCagugccaaGAGCUGcCu -3' miRNA: 3'- -UGUUGAUC-GCGUGg-------UUUGACaG- -5' |
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MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 161076 | 0.66 | 0.999979 |
Target: 5'- gACAACUuuaucAGCGUgGCCGAGCcgGUCa -3' miRNA: 3'- -UGUUGA-----UCGCG-UGGUUUGa-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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