Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 16030 | 0.69 | 0.998783 |
Target: 5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3' miRNA: 3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5' |
|||||||
MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 12961 | 0.69 | 0.998783 |
Target: 5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3' miRNA: 3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5' |
|||||||
MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 10698 | 0.67 | 0.9999 |
Target: 5'- aACAGCUAGUGUACUuuuguAGGCUG-Ca -3' miRNA: 3'- -UGUUGAUCGCGUGG-----UUUGACaG- -5' |
|||||||
MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | - | 4832 | 0.68 | 0.999701 |
Target: 5'- aGCGACUGGCGCaacACCGucuCUGg- -3' miRNA: 3'- -UGUUGAUCGCG---UGGUuu-GACag -5' |
|||||||
MIMAT0003421 | ebv-miR-BART11-5p | -44.6 | NC_007605.1 | + | 4340 | 0.71 | 0.991241 |
Target: 5'- aGCAGCUGGUcaagagcgGCAUCGuGCUGUCa -3' miRNA: 3'- -UGUUGAUCG--------CGUGGUuUGACAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home