Results 1 - 10 of 10 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | - | 2761 | 0.71 | 0.840062 |
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Target: 5'- gGGCAGUUGGCCUGGaUGguccccGCGg -3' miRNA: 3'- -CCGUCAGUCGGACC-ACa-----CGCa -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 55677 | 0.66 | 0.977794 |
|
Target: 5'- cGguGUCGGCCagcGGUG-GCGUg -3' miRNA: 3'- cCguCAGUCGGa--CCACaCGCA- -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 59027 | 0.67 | 0.958058 |
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Target: 5'- uGCAGUgGGCCUGGU-UGCa- -3' miRNA: 3'- cCGUCAgUCGGACCAcACGca -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 132065 | 0.74 | 0.642133 |
|
Target: 5'- gGGCAGUaGGCUuuUGGUGUGCGg -3' miRNA: 3'- -CCGUCAgUCGG--ACCACACGCa -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 132845 | 0.68 | 0.928764 |
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Target: 5'- gGGCAGUCagGGCCUGGaagucuUGgcgGCGUu -3' miRNA: 3'- -CCGUCAG--UCGGACC------ACa--CGCA- -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | - | 147620 | 1 | 0.019405 |
|
Target: 5'- aGGCAGUCAGCCUGGUGUGCGUu -3' miRNA: 3'- -CCGUCAGUCGGACCACACGCA- -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 169703 | 0.67 | 0.949412 |
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Target: 5'- aGGgGGUguGUCUGGUGgggGCGg -3' miRNA: 3'- -CCgUCAguCGGACCACa--CGCa -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 170241 | 0.67 | 0.949412 |
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Target: 5'- aGGgGGUguGUCUGGUGgggGCGg -3' miRNA: 3'- -CCgUCAguCGGACCACa--CGCa -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 170763 | 0.67 | 0.949412 |
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Target: 5'- aGGgGGUguGUCUGGUGgggGCGg -3' miRNA: 3'- -CCgUCAguCGGACCACa--CGCa -5' |
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| MIMAT0003422 | ebv-miR-BART11-3p | -50.5 | NC_007605.1 | + | 171301 | 0.67 | 0.949412 |
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Target: 5'- aGGgGGUguGUCUGGUGgggGCGg -3' miRNA: 3'- -CCgUCAguCGGACCACa--CGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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