miRNA display CGI


Results 1 - 10 of 10 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 55677 0.66 0.977794
Target:  5'- cGguGUCGGCCagcGGUG-GCGUg -3'
miRNA:   3'- cCguCAGUCGGa--CCACaCGCA- -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 59027 0.67 0.958058
Target:  5'- uGCAGUgGGCCUGGU-UGCa- -3'
miRNA:   3'- cCGUCAgUCGGACCAcACGca -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 132065 0.74 0.642133
Target:  5'- gGGCAGUaGGCUuuUGGUGUGCGg -3'
miRNA:   3'- -CCGUCAgUCGG--ACCACACGCa -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 132845 0.68 0.928764
Target:  5'- gGGCAGUCagGGCCUGGaagucuUGgcgGCGUu -3'
miRNA:   3'- -CCGUCAG--UCGGACC------ACa--CGCA- -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 169703 0.67 0.949412
Target:  5'- aGGgGGUguGUCUGGUGgggGCGg -3'
miRNA:   3'- -CCgUCAguCGGACCACa--CGCa -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 170241 0.67 0.949412
Target:  5'- aGGgGGUguGUCUGGUGgggGCGg -3'
miRNA:   3'- -CCgUCAguCGGACCACa--CGCa -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 170763 0.67 0.949412
Target:  5'- aGGgGGUguGUCUGGUGgggGCGg -3'
miRNA:   3'- -CCgUCAguCGGACCACa--CGCa -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 + 171301 0.67 0.949412
Target:  5'- aGGgGGUguGUCUGGUGgggGCGg -3'
miRNA:   3'- -CCgUCAguCGGACCACa--CGCa -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 - 2761 0.71 0.840062
Target:  5'- gGGCAGUUGGCCUGGaUGguccccGCGg -3'
miRNA:   3'- -CCGUCAGUCGGACC-ACa-----CGCa -5'
MIMAT0003422 ebv-miR-BART11-3p -50.5 NC_007605.1 - 147620 1 0.019405
Target:  5'- aGGCAGUCAGCCUGGUGUGCGUu -3'
miRNA:   3'- -CCGUCAGUCGGACCACACGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.