miRNA display CGI


Results 41 - 60 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 69477 0.67 0.99831
Target:  5'- --gUUACGCCGAGCACCGgcCAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGU--GUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 70020 0.66 0.998873
Target:  5'- uAACCGCACCA---GCUaACAGGAc -3'
miRNA:   3'- uUUGGUGUGGUuugUGG-UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 71205 0.7 0.986133
Target:  5'- --cCCAgACaCGAGCugCGCAGGAg -3'
miRNA:   3'- uuuGGUgUG-GUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 74341 0.67 0.997032
Target:  5'- -uGCuCACACUGAGCgcuaagaaacaGCCACAGGGg -3'
miRNA:   3'- uuUG-GUGUGGUUUG-----------UGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 77628 0.72 0.956512
Target:  5'- aAGGCCAauucuacCACCGGuggaaagcACACCACAGGAc -3'
miRNA:   3'- -UUUGGU-------GUGGUU--------UGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 81663 0.67 0.997949
Target:  5'- gAAACUucugGCAUUAGACGCgCGCGGGAg -3'
miRNA:   3'- -UUUGG----UGUGGUUUGUG-GUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 86302 0.73 0.914445
Target:  5'- -cAUCACACCAuAUACCGCAaGGAa -3'
miRNA:   3'- uuUGGUGUGGUuUGUGGUGU-CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 91902 0.66 0.999267
Target:  5'- --gUCGCGCCGGACAUC-CAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGuGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 104389 0.67 0.99831
Target:  5'- uGACCugGCCAGGCACCcCAu-- -3'
miRNA:   3'- uUUGGugUGGUUUGUGGuGUccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 104524 0.67 0.997526
Target:  5'- gAGACCAUGCuCAGugGCCgucugGCAGGGg -3'
miRNA:   3'- -UUUGGUGUG-GUUugUGG-----UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 105861 0.68 0.995042
Target:  5'- cGGCCuucugGCACCGGGCGCCACAcagcgaGGGu -3'
miRNA:   3'- uUUGG-----UGUGGUUUGUGGUGU------CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107229 0.66 0.999251
Target:  5'- cGGGCCuugauuaGCGCCAccuCGCCGCAGGc -3'
miRNA:   3'- -UUUGG-------UGUGGUuu-GUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107738 0.67 0.998587
Target:  5'- -uGCCGCaguagaaGCCAAAguugUGCCGCAGGAa -3'
miRNA:   3'- uuUGGUG-------UGGUUU----GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107837 0.71 0.960962
Target:  5'- uGGCCACAUUGAugGCCACAGuGGu -3'
miRNA:   3'- uUUGGUGUGGUUugUGGUGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 108663 0.72 0.956512
Target:  5'- aGGACCACgggugucACCAGcacCGCCACGGGAa -3'
miRNA:   3'- -UUUGGUG-------UGGUUu--GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 109451 0.75 0.870499
Target:  5'- -cACCGCagGCCAAAgGCCACAGGu -3'
miRNA:   3'- uuUGGUG--UGGUUUgUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 113422 0.66 0.999467
Target:  5'- uGGCCACgacuauccaggucuuGCCGuGGCGCCugGGGAu -3'
miRNA:   3'- uUUGGUG---------------UGGU-UUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 113966 0.69 0.993194
Target:  5'- ---gCAUACCAGGCACCACcccgucccaguGGGAu -3'
miRNA:   3'- uuugGUGUGGUUUGUGGUG-----------UCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 115223 0.69 0.987869
Target:  5'- --cCCAgGgCAGACugCACAGGAu -3'
miRNA:   3'- uuuGGUgUgGUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 129734 0.67 0.998615
Target:  5'- -cGCCAUGCUGAugGCCACGGu- -3'
miRNA:   3'- uuUGGUGUGGUUugUGGUGUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.