miRNA display CGI


Results 21 - 40 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 40277 0.66 0.999415
Target:  5'- cGGACCGCACC---CACC-CAGGu -3'
miRNA:   3'- -UUUGGUGUGGuuuGUGGuGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 40288 0.69 0.987869
Target:  5'- aGGACCGCgGCCGAGcCACCAgGGGc -3'
miRNA:   3'- -UUUGGUG-UGGUUU-GUGGUgUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 41406 0.68 0.994177
Target:  5'- -cACCACGCUggagGGACAuuguCCACGGGAc -3'
miRNA:   3'- uuUGGUGUGG----UUUGU----GGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 43110 0.68 0.99646
Target:  5'- ---aCACACUucccguuaGAACACCACAGGc -3'
miRNA:   3'- uuugGUGUGG--------UUUGUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 44842 0.66 0.998873
Target:  5'- uAAAUCugACCAAACAgCACGcucGGAu -3'
miRNA:   3'- -UUUGGugUGGUUUGUgGUGU---CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 45270 0.66 0.999088
Target:  5'- --cCCAC-CCGGACGCCA-AGGAc -3'
miRNA:   3'- uuuGGUGuGGUUUGUGGUgUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 49052 0.67 0.998615
Target:  5'- cAGCaACGCCAAGCuCCAgAGGAc -3'
miRNA:   3'- uUUGgUGUGGUUUGuGGUgUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 50601 0.71 0.968226
Target:  5'- cAGGCCcguGCCAAAgGCCACGGGGg -3'
miRNA:   3'- -UUUGGug-UGGUUUgUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 50631 0.67 0.997032
Target:  5'- -uGCUGCGCCGGcggcCACCACGGGc -3'
miRNA:   3'- uuUGGUGUGGUUu---GUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 53617 0.67 0.998276
Target:  5'- gGGGCCACACCGAcccGCGCCagcucaagaucguGguGGAg -3'
miRNA:   3'- -UUUGGUGUGGUU---UGUGG-------------UguCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 53657 0.67 0.998615
Target:  5'- cAGCUGCAggGAACGCUGCAGGAu -3'
miRNA:   3'- uUUGGUGUggUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 55875 0.75 0.844917
Target:  5'- gAAGCCACGCCAccgcuggccGACACCGCGGc- -3'
miRNA:   3'- -UUUGGUGUGGU---------UUGUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 57218 0.76 0.80755
Target:  5'- -cAUCACACUGGACACCGcCAGGAg -3'
miRNA:   3'- uuUGGUGUGGUUUGUGGU-GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 60037 0.68 0.995799
Target:  5'- -uGCCGCGCCAGAgACCACc--- -3'
miRNA:   3'- uuUGGUGUGGUUUgUGGUGuccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 60158 0.68 0.994177
Target:  5'- --cCCGCAcCCAGGCGgcuuCCGCAGGGg -3'
miRNA:   3'- uuuGGUGU-GGUUUGU----GGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 61300 0.66 0.999267
Target:  5'- --cCCAUAgCAGAgACCugAGGAg -3'
miRNA:   3'- uuuGGUGUgGUUUgUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 63790 0.68 0.994177
Target:  5'- -cGCCACcCCcGGCGCCGCcGGAg -3'
miRNA:   3'- uuUGGUGuGGuUUGUGGUGuCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 65484 0.71 0.968226
Target:  5'- -cGCCAgaggcgcauuCACCAGGCAgCGCGGGAg -3'
miRNA:   3'- uuUGGU----------GUGGUUUGUgGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 67503 0.75 0.844917
Target:  5'- gGAGCCugACCAAuguCACC-CAGGAu -3'
miRNA:   3'- -UUUGGugUGGUUu--GUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 68625 0.71 0.968226
Target:  5'- cAGCCACuCCAgcAACACCGCAcuGGAg -3'
miRNA:   3'- uUUGGUGuGGU--UUGUGGUGU--CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.