miRNA display CGI


Results 21 - 40 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 137387 0.67 0.997032
Target:  5'- cAGCC-CGCCAGcCACCccagACAGGAg -3'
miRNA:   3'- uUUGGuGUGGUUuGUGG----UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 136546 0.71 0.960962
Target:  5'- -uACUACGCCGGGC-CCGCGGGc -3'
miRNA:   3'- uuUGGUGUGGUUUGuGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 136123 0.68 0.994177
Target:  5'- -uGCCGCGCCGAcgACC-CAGGGc -3'
miRNA:   3'- uuUGGUGUGGUUugUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 133984 0.67 0.997032
Target:  5'- cGGCCGCGCUGAACguGCC-CGGGGc -3'
miRNA:   3'- uUUGGUGUGGUUUG--UGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 131555 0.66 0.998873
Target:  5'- --cCCACACCAGggGCACCuuccaaaaAUAGGGa -3'
miRNA:   3'- uuuGGUGUGGUU--UGUGG--------UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 129734 0.67 0.998615
Target:  5'- -cGCCAUGCUGAugGCCACGGu- -3'
miRNA:   3'- uuUGGUGUGGUUugUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 115223 0.69 0.987869
Target:  5'- --cCCAgGgCAGACugCACAGGAu -3'
miRNA:   3'- uuuGGUgUgGUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 113966 0.69 0.993194
Target:  5'- ---gCAUACCAGGCACCACcccgucccaguGGGAu -3'
miRNA:   3'- uuugGUGUGGUUUGUGGUG-----------UCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 113422 0.66 0.999467
Target:  5'- uGGCCACgacuauccaggucuuGCCGuGGCGCCugGGGAu -3'
miRNA:   3'- uUUGGUG---------------UGGU-UUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 109451 0.75 0.870499
Target:  5'- -cACCGCagGCCAAAgGCCACAGGu -3'
miRNA:   3'- uuUGGUG--UGGUUUgUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 108663 0.72 0.956512
Target:  5'- aGGACCACgggugucACCAGcacCGCCACGGGAa -3'
miRNA:   3'- -UUUGGUG-------UGGUUu--GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107837 0.71 0.960962
Target:  5'- uGGCCACAUUGAugGCCACAGuGGu -3'
miRNA:   3'- uUUGGUGUGGUUugUGGUGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107738 0.67 0.998587
Target:  5'- -uGCCGCaguagaaGCCAAAguugUGCCGCAGGAa -3'
miRNA:   3'- uuUGGUG-------UGGUUU----GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107229 0.66 0.999251
Target:  5'- cGGGCCuugauuaGCGCCAccuCGCCGCAGGc -3'
miRNA:   3'- -UUUGG-------UGUGGUuu-GUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 105861 0.68 0.995042
Target:  5'- cGGCCuucugGCACCGGGCGCCACAcagcgaGGGu -3'
miRNA:   3'- uUUGG-----UGUGGUUUGUGGUGU------CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 104524 0.67 0.997526
Target:  5'- gAGACCAUGCuCAGugGCCgucugGCAGGGg -3'
miRNA:   3'- -UUUGGUGUG-GUUugUGG-----UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 104389 0.67 0.99831
Target:  5'- uGACCugGCCAGGCACCcCAu-- -3'
miRNA:   3'- uUUGGugUGGUUUGUGGuGUccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 91902 0.66 0.999267
Target:  5'- --gUCGCGCCGGACAUC-CAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGuGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 86302 0.73 0.914445
Target:  5'- -cAUCACACCAuAUACCGCAaGGAa -3'
miRNA:   3'- uuUGGUGUGGUuUGUGGUGU-CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 81663 0.67 0.997949
Target:  5'- gAAACUucugGCAUUAGACGCgCGCGGGAg -3'
miRNA:   3'- -UUUGG----UGUGGUUUGUG-GUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.