miRNA display CGI


Results 21 - 40 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 109451 0.75 0.870499
Target:  5'- -cACCGCagGCCAAAgGCCACAGGu -3'
miRNA:   3'- uuUGGUG--UGGUUUgUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 113966 0.69 0.993194
Target:  5'- ---gCAUACCAGGCACCACcccgucccaguGGGAu -3'
miRNA:   3'- uuugGUGUGGUUUGUGGUG-----------UCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 131555 0.66 0.998873
Target:  5'- --cCCACACCAGggGCACCuuccaaaaAUAGGGa -3'
miRNA:   3'- uuuGGUGUGGUU--UGUGG--------UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 133984 0.67 0.997032
Target:  5'- cGGCCGCGCUGAACguGCC-CGGGGc -3'
miRNA:   3'- uUUGGUGUGGUUUG--UGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 136546 0.71 0.960962
Target:  5'- -uACUACGCCGGGC-CCGCGGGc -3'
miRNA:   3'- uuUGGUGUGGUUUGuGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 137387 0.67 0.997032
Target:  5'- cAGCC-CGCCAGcCACCccagACAGGAg -3'
miRNA:   3'- uUUGGuGUGGUUuGUGG----UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 147319 0.68 0.995042
Target:  5'- cGACCACACCuuugaGGACACCu--GGAg -3'
miRNA:   3'- uUUGGUGUGG-----UUUGUGGuguCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 150767 0.71 0.960962
Target:  5'- gAGGCCGCGCCAGAgcagaGCC-CGGGAc -3'
miRNA:   3'- -UUUGGUGUGGUUUg----UGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 159341 0.69 0.992083
Target:  5'- uAGACCACGuccccCCAGACGCgcaggCACAGGGu -3'
miRNA:   3'- -UUUGGUGU-----GGUUUGUG-----GUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 160649 0.66 0.998873
Target:  5'- cAGCCACGuCCAGACuCCGgGGGu -3'
miRNA:   3'- uUUGGUGU-GGUUUGuGGUgUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 161107 0.66 0.999415
Target:  5'- -cACCACAUCAAACA-CACAGu- -3'
miRNA:   3'- uuUGGUGUGGUUUGUgGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 5525 0.66 0.998873
Target:  5'- cGAGCCuuGCACCcAACAagGCAGGAc -3'
miRNA:   3'- -UUUGG--UGUGGuUUGUggUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 9882 0.7 0.982098
Target:  5'- aAAGCaGCACCAGGCACUGCAGa- -3'
miRNA:   3'- -UUUGgUGUGGUUUGUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 10884 0.68 0.994177
Target:  5'- cGAGCCGCccggcucCCGGACGCUugAGGGc -3'
miRNA:   3'- -UUUGGUGu------GGUUUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 13209 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 16278 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 19347 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 22416 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 25485 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 28554 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.