miRNA display CGI


Results 21 - 40 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107738 0.67 0.998587
Target:  5'- -uGCCGCaguagaaGCCAAAguugUGCCGCAGGAa -3'
miRNA:   3'- uuUGGUG-------UGGUUU----GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107229 0.66 0.999251
Target:  5'- cGGGCCuugauuaGCGCCAccuCGCCGCAGGc -3'
miRNA:   3'- -UUUGG-------UGUGGUuu-GUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 105861 0.68 0.995042
Target:  5'- cGGCCuucugGCACCGGGCGCCACAcagcgaGGGu -3'
miRNA:   3'- uUUGG-----UGUGGUUUGUGGUGU------CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 104389 0.67 0.99831
Target:  5'- uGACCugGCCAGGCACCcCAu-- -3'
miRNA:   3'- uUUGGugUGGUUUGUGGuGUccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 91902 0.66 0.999267
Target:  5'- --gUCGCGCCGGACAUC-CAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGuGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 77628 0.72 0.956512
Target:  5'- aAGGCCAauucuacCACCGGuggaaagcACACCACAGGAc -3'
miRNA:   3'- -UUUGGU-------GUGGUU--------UGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 74341 0.67 0.997032
Target:  5'- -uGCuCACACUGAGCgcuaagaaacaGCCACAGGGg -3'
miRNA:   3'- uuUG-GUGUGGUUUG-----------UGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 71205 0.7 0.986133
Target:  5'- --cCCAgACaCGAGCugCGCAGGAg -3'
miRNA:   3'- uuuGGUgUG-GUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 69477 0.67 0.99831
Target:  5'- --gUUACGCCGAGCACCGgcCAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGU--GUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 67503 0.75 0.844917
Target:  5'- gGAGCCugACCAAuguCACC-CAGGAu -3'
miRNA:   3'- -UUUGGugUGGUUu--GUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 65484 0.71 0.968226
Target:  5'- -cGCCAgaggcgcauuCACCAGGCAgCGCGGGAg -3'
miRNA:   3'- uuUGGU----------GUGGUUUGUgGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 63790 0.68 0.994177
Target:  5'- -cGCCACcCCcGGCGCCGCcGGAg -3'
miRNA:   3'- uuUGGUGuGGuUUGUGGUGuCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 60158 0.68 0.994177
Target:  5'- --cCCGCAcCCAGGCGgcuuCCGCAGGGg -3'
miRNA:   3'- uuuGGUGU-GGUUUGU----GGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 60037 0.68 0.995799
Target:  5'- -uGCCGCGCCAGAgACCACc--- -3'
miRNA:   3'- uuUGGUGUGGUUUgUGGUGuccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 57218 0.76 0.80755
Target:  5'- -cAUCACACUGGACACCGcCAGGAg -3'
miRNA:   3'- uuUGGUGUGGUUUGUGGU-GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 55875 0.75 0.844917
Target:  5'- gAAGCCACGCCAccgcuggccGACACCGCGGc- -3'
miRNA:   3'- -UUUGGUGUGGU---------UUGUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 53657 0.67 0.998615
Target:  5'- cAGCUGCAggGAACGCUGCAGGAu -3'
miRNA:   3'- uUUGGUGUggUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 53617 0.67 0.998276
Target:  5'- gGGGCCACACCGAcccGCGCCagcucaagaucguGguGGAg -3'
miRNA:   3'- -UUUGGUGUGGUU---UGUGG-------------UguCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 50601 0.71 0.968226
Target:  5'- cAGGCCcguGCCAAAgGCCACGGGGg -3'
miRNA:   3'- -UUUGGug-UGGUUUgUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 45270 0.66 0.999088
Target:  5'- --cCCAC-CCGGACGCCA-AGGAc -3'
miRNA:   3'- uuuGGUGuGGUUUGUGGUgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.