miRNA display CGI


Results 1 - 20 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 167249 0.68 0.99496
Target:  5'- cAAGCCACACCuAACucauGCCagcagagGCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuUUG----UGG-------UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 166004 0.67 0.998615
Target:  5'- gAAACCGCG----GCGCUACAGGAu -3'
miRNA:   3'- -UUUGGUGUgguuUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 165100 0.7 0.977239
Target:  5'- cGGCCACACaGGAgGCCaACAGGAg -3'
miRNA:   3'- uUUGGUGUGgUUUgUGG-UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 164213 0.67 0.997949
Target:  5'- uGGCCACACUggGGACcggcuacgcggGCCACAGGu -3'
miRNA:   3'- uUUGGUGUGG--UUUG-----------UGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 159266 0.68 0.99646
Target:  5'- uGGCuCGCugCuguGACGCCGCAGGu -3'
miRNA:   3'- uUUG-GUGugGu--UUGUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 157339 0.66 0.999415
Target:  5'- --gUgGCgGCCAAGCGCCugGGGGa -3'
miRNA:   3'- uuuGgUG-UGGUUUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 156206 0.79 0.646055
Target:  5'- --uCCagACACCAGGCGCCGCAGGGg -3'
miRNA:   3'- uuuGG--UGUGGUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 155853 0.66 0.998873
Target:  5'- --uCUACGCCAGcGCGCCuCAGGGu -3'
miRNA:   3'- uuuGGUGUGGUU-UGUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 155797 0.69 0.989431
Target:  5'- aAGGCCAgCACCuucgACCGCAGGAc -3'
miRNA:   3'- -UUUGGU-GUGGuuugUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 153416 0.66 0.999537
Target:  5'- cGGCCuACGCCGAGCGgCACGGc- -3'
miRNA:   3'- uUUGG-UGUGGUUUGUgGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 147982 1.01 0.042695
Target:  5'- aAAACCACACCAAACACCACAGGAc -3'
miRNA:   3'- -UUUGGUGUGGUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 146572 0.71 0.971473
Target:  5'- uGGCCACACUAAACACacaaACGGaGAu -3'
miRNA:   3'- uUUGGUGUGGUUUGUGg---UGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 144597 0.69 0.992083
Target:  5'- uGGGCCcaGgGCCAAGCucugccACCACAGGAg -3'
miRNA:   3'- -UUUGG--UgUGGUUUG------UGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 138891 0.69 0.990832
Target:  5'- gAGACC--ACCGGACACCGCGGaGGg -3'
miRNA:   3'- -UUUGGugUGGUUUGUGGUGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 137768 0.69 0.990832
Target:  5'- --cCCACACCAcaAGCACCagucACAGGc -3'
miRNA:   3'- uuuGGUGUGGU--UUGUGG----UGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 136123 0.68 0.994177
Target:  5'- -uGCCGCGCCGAcgACC-CAGGGc -3'
miRNA:   3'- uuUGGUGUGGUUugUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 129734 0.67 0.998615
Target:  5'- -cGCCAUGCUGAugGCCACGGu- -3'
miRNA:   3'- uuUGGUGUGGUUugUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 115223 0.69 0.987869
Target:  5'- --cCCAgGgCAGACugCACAGGAu -3'
miRNA:   3'- uuuGGUgUgGUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 113422 0.66 0.999467
Target:  5'- uGGCCACgacuauccaggucuuGCCGuGGCGCCugGGGAu -3'
miRNA:   3'- uUUGGUG---------------UGGU-UUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107837 0.71 0.960962
Target:  5'- uGGCCACAUUGAugGCCACAGuGGu -3'
miRNA:   3'- uUUGGUGUGGUUugUGGUGUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.