miRNA display CGI


Results 1 - 20 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 147982 1.01 0.042695
Target:  5'- aAAACCACACCAAACACCACAGGAc -3'
miRNA:   3'- -UUUGGUGUGGUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 156206 0.79 0.646055
Target:  5'- --uCCagACACCAGGCGCCGCAGGGg -3'
miRNA:   3'- uuuGG--UGUGGUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 57218 0.76 0.80755
Target:  5'- -cAUCACACUGGACACCGcCAGGAg -3'
miRNA:   3'- uuUGGUGUGGUUUGUGGU-GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 67503 0.75 0.844917
Target:  5'- gGAGCCugACCAAuguCACC-CAGGAu -3'
miRNA:   3'- -UUUGGugUGGUUu--GUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 55875 0.75 0.844917
Target:  5'- gAAGCCACGCCAccgcuggccGACACCGCGGc- -3'
miRNA:   3'- -UUUGGUGUGGU---------UUGUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 109451 0.75 0.870499
Target:  5'- -cACCGCagGCCAAAgGCCACAGGu -3'
miRNA:   3'- uuUGGUG--UGGUUUgUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 86302 0.73 0.914445
Target:  5'- -cAUCACACCAuAUACCGCAaGGAa -3'
miRNA:   3'- uuUGGUGUGGUuUGUGGUGU-CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 108663 0.72 0.956512
Target:  5'- aGGACCACgggugucACCAGcacCGCCACGGGAa -3'
miRNA:   3'- -UUUGGUG-------UGGUUu--GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 77628 0.72 0.956512
Target:  5'- aAGGCCAauucuacCACCGGuggaaagcACACCACAGGAc -3'
miRNA:   3'- -UUUGGU-------GUGGUU--------UGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 150767 0.71 0.960962
Target:  5'- gAGGCCGCGCCAGAgcagaGCC-CGGGAc -3'
miRNA:   3'- -UUUGGUGUGGUUUg----UGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 136546 0.71 0.960962
Target:  5'- -uACUACGCCGGGC-CCGCGGGc -3'
miRNA:   3'- uuUGGUGUGGUUUGuGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107837 0.71 0.960962
Target:  5'- uGGCCACAUUGAugGCCACAGuGGu -3'
miRNA:   3'- uUUGGUGUGGUUugUGGUGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 65484 0.71 0.968226
Target:  5'- -cGCCAgaggcgcauuCACCAGGCAgCGCGGGAg -3'
miRNA:   3'- uuUGGU----------GUGGUUUGUgGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 68625 0.71 0.968226
Target:  5'- cAGCCACuCCAgcAACACCGCAcuGGAg -3'
miRNA:   3'- uUUGGUGuGGU--UUGUGGUGU--CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 50601 0.71 0.968226
Target:  5'- cAGGCCcguGCCAAAgGCCACGGGGg -3'
miRNA:   3'- -UUUGGug-UGGUUUgUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 146572 0.71 0.971473
Target:  5'- uGGCCACACUAAACACacaaACGGaGAu -3'
miRNA:   3'- uUUGGUGUGGUUUGUGg---UGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 165100 0.7 0.977239
Target:  5'- cGGCCACACaGGAgGCCaACAGGAg -3'
miRNA:   3'- uUUGGUGUGgUUUgUGG-UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 9882 0.7 0.982098
Target:  5'- aAAGCaGCACCAGGCACUGCAGa- -3'
miRNA:   3'- -UUUGgUGUGGUUUGUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 71205 0.7 0.986133
Target:  5'- --cCCAgACaCGAGCugCGCAGGAg -3'
miRNA:   3'- uuuGGUgUG-GUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 115223 0.69 0.987869
Target:  5'- --cCCAgGgCAGACugCACAGGAu -3'
miRNA:   3'- uuuGGUgUgGUUUGugGUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.