miRNA display CGI


Results 21 - 40 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 115223 0.69 0.987869
Target:  5'- --cCCAgGgCAGACugCACAGGAu -3'
miRNA:   3'- uuuGGUgUgGUUUGugGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 155797 0.69 0.989431
Target:  5'- aAGGCCAgCACCuucgACCGCAGGAc -3'
miRNA:   3'- -UUUGGU-GUGGuuugUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 137768 0.69 0.990832
Target:  5'- --cCCACACCAcaAGCACCagucACAGGc -3'
miRNA:   3'- uuuGGUGUGGU--UUGUGG----UGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 138891 0.69 0.990832
Target:  5'- gAGACC--ACCGGACACCGCGGaGGg -3'
miRNA:   3'- -UUUGGugUGGUUUGUGGUGUC-CU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 159341 0.69 0.992083
Target:  5'- uAGACCACGuccccCCAGACGCgcaggCACAGGGu -3'
miRNA:   3'- -UUUGGUGU-----GGUUUGUG-----GUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 144597 0.69 0.992083
Target:  5'- uGGGCCcaGgGCCAAGCucugccACCACAGGAg -3'
miRNA:   3'- -UUUGG--UgUGGUUUG------UGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 113966 0.69 0.993194
Target:  5'- ---gCAUACCAGGCACCACcccgucccaguGGGAu -3'
miRNA:   3'- uuugGUGUGGUUUGUGGUG-----------UCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 10884 0.68 0.994177
Target:  5'- cGAGCCGCccggcucCCGGACGCUugAGGGc -3'
miRNA:   3'- -UUUGGUGu------GGUUUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 41406 0.68 0.994177
Target:  5'- -cACCACGCUggagGGACAuuguCCACGGGAc -3'
miRNA:   3'- uuUGGUGUGG----UUUGU----GGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 60158 0.68 0.994177
Target:  5'- --cCCGCAcCCAGGCGgcuuCCGCAGGGg -3'
miRNA:   3'- uuuGGUGU-GGUUUGU----GGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 136123 0.68 0.994177
Target:  5'- -uGCCGCGCCGAcgACC-CAGGGc -3'
miRNA:   3'- uuUGGUGUGGUUugUGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 63790 0.68 0.994177
Target:  5'- -cGCCACcCCcGGCGCCGCcGGAg -3'
miRNA:   3'- uuUGGUGuGGuUUGUGGUGuCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 167249 0.68 0.99496
Target:  5'- cAAGCCACACCuAACucauGCCagcagagGCAGGAa -3'
miRNA:   3'- -UUUGGUGUGGuUUG----UGG-------UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 147319 0.68 0.995042
Target:  5'- cGACCACACCuuugaGGACACCu--GGAg -3'
miRNA:   3'- uUUGGUGUGG-----UUUGUGGuguCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 105861 0.68 0.995042
Target:  5'- cGGCCuucugGCACCGGGCGCCACAcagcgaGGGu -3'
miRNA:   3'- uUUGG-----UGUGGUUUGUGGUGU------CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 60037 0.68 0.995799
Target:  5'- -uGCCGCGCCAGAgACCACc--- -3'
miRNA:   3'- uuUGGUGUGGUUUgUGGUGuccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 43110 0.68 0.99646
Target:  5'- ---aCACACUucccguuaGAACACCACAGGc -3'
miRNA:   3'- uuugGUGUGG--------UUUGUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 159266 0.68 0.99646
Target:  5'- uGGCuCGCugCuguGACGCCGCAGGu -3'
miRNA:   3'- uUUG-GUGugGu--UUGUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 133984 0.67 0.997032
Target:  5'- cGGCCGCGCUGAACguGCC-CGGGGc -3'
miRNA:   3'- uUUGGUGUGGUUUG--UGGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 137387 0.67 0.997032
Target:  5'- cAGCC-CGCCAGcCACCccagACAGGAg -3'
miRNA:   3'- uUUGGuGUGGUUuGUGG----UGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.