Results 21 - 40 of 85 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 107229 | 0.66 | 0.999251 |
Target: 5'- cGGGCCuugauuaGCGCCAccuCGCCGCAGGc -3' miRNA: 3'- -UUUGG-------UGUGGUuu-GUGGUGUCCu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 61300 | 0.66 | 0.999267 |
Target: 5'- --cCCAUAgCAGAgACCugAGGAg -3' miRNA: 3'- uuuGGUGUgGUUUgUGGugUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 70020 | 0.66 | 0.998873 |
Target: 5'- uAACCGCACCA---GCUaACAGGAc -3' miRNA: 3'- uUUGGUGUGGUuugUGG-UGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 153416 | 0.66 | 0.999537 |
Target: 5'- cGGCCuACGCCGAGCGgCACGGc- -3' miRNA: 3'- uUUGG-UGUGGUUUGUgGUGUCcu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 12758 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 15827 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 21964 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 28102 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 31171 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 34240 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 18896 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 25033 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 107738 | 0.67 | 0.998587 |
Target: 5'- -uGCCGCaguagaaGCCAAAguugUGCCGCAGGAa -3' miRNA: 3'- uuUGGUG-------UGGUUU----GUGGUGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 133984 | 0.67 | 0.997032 |
Target: 5'- cGGCCGCGCUGAACguGCC-CGGGGc -3' miRNA: 3'- uUUGGUGUGGUUUG--UGGuGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 50631 | 0.67 | 0.997032 |
Target: 5'- -uGCUGCGCCGGcggcCACCACGGGc -3' miRNA: 3'- uuUGGUGUGGUUu---GUGGUGUCCu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 137387 | 0.67 | 0.997032 |
Target: 5'- cAGCC-CGCCAGcCACCccagACAGGAg -3' miRNA: 3'- uUUGGuGUGGUUuGUGG----UGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 104389 | 0.67 | 0.99831 |
Target: 5'- uGACCugGCCAGGCACCcCAu-- -3' miRNA: 3'- uUUGGugUGGUUUGUGGuGUccu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 53617 | 0.67 | 0.998276 |
Target: 5'- gGGGCCACACCGAcccGCGCCagcucaagaucguGguGGAg -3' miRNA: 3'- -UUUGGUGUGGUU---UGUGG-------------UguCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 49052 | 0.67 | 0.998615 |
Target: 5'- cAGCaACGCCAAGCuCCAgAGGAc -3' miRNA: 3'- uUUGgUGUGGUUUGuGGUgUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 104524 | 0.67 | 0.997526 |
Target: 5'- gAGACCAUGCuCAGugGCCgucugGCAGGGg -3' miRNA: 3'- -UUUGGUGUG-GUUugUGG-----UGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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