miRNA display CGI


Results 1 - 20 of 56 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 5238 0.72 0.779479
Target:  5'- cGGCCUCGGGGCUG-UgGGGUc- -3'
miRNA:   3'- -UUGGGGCCCCGACuAgUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 13280 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 16358 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 19435 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 22513 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 25591 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 28669 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 34069 0.67 0.96665
Target:  5'- cACCCCGGGGagGAggcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 35131 0.71 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 35324 0.69 0.9132
Target:  5'- uAACUCCGGGcCUGAagAGGUUGa -3'
miRNA:   3'- -UUGGGGCCCcGACUagUCCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 35480 1.02 0.01709
Target:  5'- cAACCCCGGGGCUGAUCAGGUUAa -3'
miRNA:   3'- -UUGGGGCCCCGACUAGUCCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 41605 0.66 0.980776
Target:  5'- aGGCCCgGgGGGCUGGUCcgcuGGg-- -3'
miRNA:   3'- -UUGGGgC-CCCGACUAGu---CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 44456 0.71 0.853719
Target:  5'- cACCCCGGGGCccg-CAGGg-- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 46470 0.67 0.969934
Target:  5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3'
miRNA:   3'- uUGG-GGCCCCGAc-----UAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 48578 0.66 0.982957
Target:  5'- --aUCCGGGGCcucgggGGUCAGGg-- -3'
miRNA:   3'- uugGGGCCCCGa-----CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 51827 0.66 0.982748
Target:  5'- -uCCCCGGGGCggcgugGAggggggcUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa-----CU-------AGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 52699 0.66 0.980776
Target:  5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3'
miRNA:   3'- -UUGGGGCC--CCgaCUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 52863 0.66 0.980776
Target:  5'- cGCCCgGGGGCUc--CAGGUc- -3'
miRNA:   3'- uUGGGgCCCCGAcuaGUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 56752 0.66 0.982957
Target:  5'- gGACgUCCGGGGCcUGAUCGcGGa-- -3'
miRNA:   3'- -UUG-GGGCCCCG-ACUAGU-CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 57287 0.66 0.984947
Target:  5'- -gUCgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGGgGCCCCGACua------GUCCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.