Results 21 - 27 of 27 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 40066 | 0.67 | 0.897926 |
Target: 5'- uGGCAcauGU--GGGCGGCGGGGUGgGg -3' miRNA: 3'- -UCGU---CAucUCUGCCGCUCCACgC- -5' |
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MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 2475 | 0.67 | 0.904596 |
Target: 5'- uGGCGGUGuGGcCGGCGGGGgcagGCa -3' miRNA: 3'- -UCGUCAUcUCuGCCGCUCCa---CGc -5' |
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MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | - | 42443 | 0.66 | 0.911008 |
Target: 5'- cGCAuucGGGGACGGCGGGGacggGCa -3' miRNA: 3'- uCGUca-UCUCUGCCGCUCCa---CGc -5' |
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MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 151398 | 0.66 | 0.928677 |
Target: 5'- uGCAGgcgGGGGAUGGCGcGGcgGCa -3' miRNA: 3'- uCGUCa--UCUCUGCCGCuCCa-CGc -5' |
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MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 41295 | 0.66 | 0.934042 |
Target: 5'- cGGCGacGGAGACGGCgGAGGcaugGCGu -3' miRNA: 3'- -UCGUcaUCUCUGCCG-CUCCa---CGC- -5' |
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MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | - | 130828 | 0.66 | 0.934042 |
Target: 5'- cGUAGUAGGGA-GGCGcGG-GCGg -3' miRNA: 3'- uCGUCAUCUCUgCCGCuCCaCGC- -5' |
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MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | - | 135215 | 0.66 | 0.934042 |
Target: 5'- uGgAGUGGGGGUGGUGGGGUGaCGc -3' miRNA: 3'- uCgUCAUCUCUGCCGCUCCAC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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