miRNA display CGI


Results 1 - 20 of 28 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 2970 0.68 1
Target:  5'- gGACACCGCgagguacgaguacgGCAGUaccuggucaUGCUGGGg -3'
miRNA:   3'- -UUGUGGCG--------------UGUUA---------AUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 154232 0.67 1
Target:  5'- uAACGCCGCACAccGUUaGCcAGGc -3'
miRNA:   3'- -UUGUGGCGUGU--UAA-UGaUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 159006 0.66 1
Target:  5'- -cCACCGCGUAGUUGCcGGGc -3'
miRNA:   3'- uuGUGGCGUGUUAAUGaUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 153527 0.66 1
Target:  5'- uGCGCCGCcagauCAAUcggaUGCUGGGc -3'
miRNA:   3'- uUGUGGCGu----GUUA----AUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 30651 0.67 1
Target:  5'- cACGCCaGCACugAGUUACUgcGGGUg -3'
miRNA:   3'- uUGUGG-CGUG--UUAAUGA--UCCA- -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 53985 0.67 1
Target:  5'- gGACGCCGCGCGG--GCcgAGGc -3'
miRNA:   3'- -UUGUGGCGUGUUaaUGa-UCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 153322 0.66 1
Target:  5'- cACACUGCGCAAgaGCaugAGGg -3'
miRNA:   3'- uUGUGGCGUGUUaaUGa--UCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 170697 0.66 1
Target:  5'- -cCGCCGCGC----GCUGGGg -3'
miRNA:   3'- uuGUGGCGUGuuaaUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 102615 0.67 1
Target:  5'- uGACACCGCGCca----UGGGUg -3'
miRNA:   3'- -UUGUGGCGUGuuaaugAUCCA- -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 138083 0.68 1
Target:  5'- gGACGCCGgGCcg--GCUGGGg -3'
miRNA:   3'- -UUGUGGCgUGuuaaUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 131255 0.66 1
Target:  5'- --gGCCGCACAGUgggccgGCgGGGg -3'
miRNA:   3'- uugUGGCGUGUUAa-----UGaUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 34253 0.68 1
Target:  5'- gGACGCCGgGCcg--GCUGGGg -3'
miRNA:   3'- -UUGUGGCgUGuuaaUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 56438 0.66 1
Target:  5'- cGCACCaGCACc--UGCUGGGc -3'
miRNA:   3'- uUGUGG-CGUGuuaAUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 72565 0.66 1
Target:  5'- gGGCGCCG-GCGuggUGCUGGGg -3'
miRNA:   3'- -UUGUGGCgUGUua-AUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 80864 0.66 1
Target:  5'- cGCACCcCGCGGUgccaucACUGGGUg -3'
miRNA:   3'- uUGUGGcGUGUUAa-----UGAUCCA- -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 109090 0.66 1
Target:  5'- -cCACCaGCGCcccuaauGUUGCUAGGg -3'
miRNA:   3'- uuGUGG-CGUGu------UAAUGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 116289 0.68 1
Target:  5'- cGCACCGCACGggUGaaugUGGGg -3'
miRNA:   3'- uUGUGGCGUGUuaAUg---AUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 128989 0.66 1
Target:  5'- gGACGgCGCACGAcUACgAGGg -3'
miRNA:   3'- -UUGUgGCGUGUUaAUGaUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 + 129034 0.66 1
Target:  5'- gGGCACgGCGCAGcccgaGCUGGGc -3'
miRNA:   3'- -UUGUGgCGUGUUaa---UGAUCCa -5'
MIMAT0003430 rlcv-miR-rL1-4-5p -40.3 NC_006146.1 - 129517 0.66 1
Target:  5'- cGCGCUGCGCGAggACgagcucAGGUu -3'
miRNA:   3'- uUGUGGCGUGUUaaUGa-----UCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.