Results 21 - 28 of 28 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 67855 | 0.69 | 0.999999 |
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Target: 5'- ---uCCGCGCGGUgGCUAGGa -3' miRNA: 3'- uuguGGCGUGUUAaUGAUCCa -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 62875 | 0.69 | 0.999999 |
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Target: 5'- cGCACCGCGCGcUUGgcGGGUa -3' miRNA: 3'- uUGUGGCGUGUuAAUgaUCCA- -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 6631 | 0.7 | 0.999998 |
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Target: 5'- -cCGCCGCGCAAc--CUAGGg -3' miRNA: 3'- uuGUGGCGUGUUaauGAUCCa -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 56668 | 0.7 | 0.999995 |
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Target: 5'- uGAUGCCGCugGA--GCUGGGg -3' miRNA: 3'- -UUGUGGCGugUUaaUGAUCCa -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 133191 | 0.71 | 0.999989 |
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Target: 5'- aAACACCaCACGAUccACUAGGUc -3' miRNA: 3'- -UUGUGGcGUGUUAa-UGAUCCA- -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 105678 | 0.74 | 0.999426 |
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Target: 5'- gGACGCCGUggGCAAUUACcGGGa -3' miRNA: 3'- -UUGUGGCG--UGUUAAUGaUCCa -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 118244 | 0.75 | 0.998234 |
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Target: 5'- --gGCUGCGCAcgUACUGGGg -3' miRNA: 3'- uugUGGCGUGUuaAUGAUCCa -5' |
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| MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 133350 | 1 | 0.208729 |
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Target: 5'- cAACACCGCACAAUUACUAGGUc -3' miRNA: 3'- -UUGUGGCGUGUUAAUGAUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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