Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 131255 | 0.66 | 1 |
Target: 5'- --gGCCGCACAGUgggccgGCgGGGg -3' miRNA: 3'- uugUGGCGUGUUAa-----UGaUCCa -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 129517 | 0.66 | 1 |
Target: 5'- cGCGCUGCGCGAggACgagcucAGGUu -3' miRNA: 3'- uUGUGGCGUGUUaaUGa-----UCCA- -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 128989 | 0.66 | 1 |
Target: 5'- gGACGgCGCACGAcUACgAGGg -3' miRNA: 3'- -UUGUgGCGUGUUaAUGaUCCa -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 72565 | 0.66 | 1 |
Target: 5'- gGGCGCCG-GCGuggUGCUGGGg -3' miRNA: 3'- -UUGUGGCgUGUua-AUGAUCCa -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 80864 | 0.66 | 1 |
Target: 5'- cGCACCcCGCGGUgccaucACUGGGUg -3' miRNA: 3'- uUGUGGcGUGUUAa-----UGAUCCA- -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 109090 | 0.66 | 1 |
Target: 5'- -cCACCaGCGCcccuaauGUUGCUAGGg -3' miRNA: 3'- uuGUGG-CGUGu------UAAUGAUCCa -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 129034 | 0.66 | 1 |
Target: 5'- gGGCACgGCGCAGcccgaGCUGGGc -3' miRNA: 3'- -UUGUGgCGUGUUaa---UGAUCCa -5' |
|||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | - | 170697 | 0.66 | 1 |
Target: 5'- -cCGCCGCGC----GCUGGGg -3' miRNA: 3'- uuGUGGCGUGuuaaUGAUCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home