Results 21 - 28 of 28 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 118244 | 0.75 | 0.998234 |
Target: 5'- --gGCUGCGCAcgUACUGGGg -3' miRNA: 3'- uugUGGCGUGUuaAUGAUCCa -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 116289 | 0.68 | 1 |
Target: 5'- cGCACCGCACGggUGaaugUGGGg -3' miRNA: 3'- uUGUGGCGUGUuaAUg---AUCCa -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 109090 | 0.66 | 1 |
Target: 5'- -cCACCaGCGCcccuaauGUUGCUAGGg -3' miRNA: 3'- uuGUGG-CGUGu------UAAUGAUCCa -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 80864 | 0.66 | 1 |
Target: 5'- cGCACCcCGCGGUgccaucACUGGGUg -3' miRNA: 3'- uUGUGGcGUGUUAa-----UGAUCCA- -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 72565 | 0.66 | 1 |
Target: 5'- gGGCGCCG-GCGuggUGCUGGGg -3' miRNA: 3'- -UUGUGGCgUGUua-AUGAUCCa -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 56438 | 0.66 | 1 |
Target: 5'- cGCACCaGCACc--UGCUGGGc -3' miRNA: 3'- uUGUGG-CGUGuuaAUGAUCCa -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 34253 | 0.68 | 1 |
Target: 5'- gGACGCCGgGCcg--GCUGGGg -3' miRNA: 3'- -UUGUGGCgUGuuaaUGAUCCa -5' |
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MIMAT0003430 | rlcv-miR-rL1-4-5p | -40.3 | NC_006146.1 | + | 2970 | 0.68 | 1 |
Target: 5'- gGACACCGCgagguacgaguacgGCAGUaccuggucaUGCUGGGg -3' miRNA: 3'- -UUGUGGCG--------------UGUUA---------AUGAUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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