Results 1 - 20 of 20 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 141199 | 1.01 | 0.026758 |
Target: 5'- gCUAUCAGGUCACCGGCGCACUAc -3' miRNA: 3'- -GAUAGUCCAGUGGCCGCGUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 38045 | 0.77 | 0.611385 |
Target: 5'- cCUAUCuGGUCGCCGGCcacuucugugGCACUGu -3' miRNA: 3'- -GAUAGuCCAGUGGCCG----------CGUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 79811 | 0.72 | 0.87516 |
Target: 5'- cCUGUCcccGGGacgagcUCACCGGUGCGCUGu -3' miRNA: 3'- -GAUAG---UCC------AGUGGCCGCGUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 129402 | 0.71 | 0.917612 |
Target: 5'- -aAUCGGGU-GCUGGCGCGCa- -3' miRNA: 3'- gaUAGUCCAgUGGCCGCGUGau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 167180 | 0.71 | 0.890402 |
Target: 5'- ---aCGGGagGCCGGCGCGCg- -3' miRNA: 3'- gauaGUCCagUGGCCGCGUGau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 168112 | 0.71 | 0.890402 |
Target: 5'- ---aCGGGagGCCGGCGCGCg- -3' miRNA: 3'- gauaGUCCagUGGCCGCGUGau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 169044 | 0.71 | 0.890402 |
Target: 5'- ---aCGGGagGCCGGCGCGCg- -3' miRNA: 3'- gauaGUCCagUGGCCGCGUGau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 169976 | 0.71 | 0.890402 |
Target: 5'- ---aCGGGagGCCGGCGCGCg- -3' miRNA: 3'- gauaGUCCagUGGCCGCGUGau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 167906 | 0.7 | 0.940307 |
Target: 5'- cCUcgCGGGggCACCGGCGCGu-- -3' miRNA: 3'- -GAuaGUCCa-GUGGCCGCGUgau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 168838 | 0.7 | 0.940307 |
Target: 5'- cCUcgCGGGggCACCGGCGCGu-- -3' miRNA: 3'- -GAuaGUCCa-GUGGCCGCGUgau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 169770 | 0.7 | 0.940307 |
Target: 5'- cCUcgCGGGggCACCGGCGCGu-- -3' miRNA: 3'- -GAuaGUCCa-GUGGCCGCGUgau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 46109 | 0.7 | 0.929528 |
Target: 5'- cCUAcggCAcGGUCACCGGCcggGCGCUGa -3' miRNA: 3'- -GAUa--GU-CCAGUGGCCG---CGUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 143305 | 0.69 | 0.94996 |
Target: 5'- --cUCAGGUCACCGGCuccaggaaACUAa -3' miRNA: 3'- gauAGUCCAGUGGCCGcg------UGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 128571 | 0.69 | 0.94996 |
Target: 5'- -gGUCAGGUUGauGGCGUACUGg -3' miRNA: 3'- gaUAGUCCAGUggCCGCGUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | - | 109803 | 0.69 | 0.962387 |
Target: 5'- cCUGUCGcGuGUUugCGGCGCGCg- -3' miRNA: 3'- -GAUAGU-C-CAGugGCCGCGUGau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 117926 | 0.69 | 0.958512 |
Target: 5'- ---gCAGGUcCGCCuGCGCACUAc -3' miRNA: 3'- gauaGUCCA-GUGGcCGCGUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 170702 | 0.67 | 0.986577 |
Target: 5'- gUcgCGGGggCACCGGCGCGu-- -3' miRNA: 3'- gAuaGUCCa-GUGGCCGCGUgau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 68187 | 0.67 | 0.988247 |
Target: 5'- -cGUCAGGaCGCgGGCGCAg-- -3' miRNA: 3'- gaUAGUCCaGUGgCCGCGUgau -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 164296 | 0.66 | 0.995162 |
Target: 5'- uUAUgAGGUcCGCCGGgGcCACUGc -3' miRNA: 3'- gAUAgUCCA-GUGGCCgC-GUGAU- -5' |
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MIMAT0003439 | rlcv-miR-rL1-10 | -49.2 | NC_006146.1 | + | 68974 | 0.66 | 0.993377 |
Target: 5'- -gGUCAccgcccccgcGGcCACCGGCGCAUUu -3' miRNA: 3'- gaUAGU----------CCaGUGGCCGCGUGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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