miRNA display CGI


Results 1 - 20 of 37 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 124741 0.66 1
Target:  5'- aGGAUGAAGcuGCucugcguuuuGUGCCUGCUg -3'
miRNA:   3'- cCUUACUUC--UG----------UACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 114503 0.66 1
Target:  5'- gGGGAUGcGGAUAUGCUUGa- -3'
miRNA:   3'- -CCUUACuUCUGUACGGACga -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 114916 0.66 1
Target:  5'- uGGAUGggGGCguGUGUCUGUUu -3'
miRNA:   3'- cCUUACuuCUG--UACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 66433 0.66 1
Target:  5'- --cGUGGAGA-AUGCCUGCg -3'
miRNA:   3'- ccuUACUUCUgUACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 148523 0.66 1
Target:  5'- aGggUGGAGAgCAUG-CUGCUg -3'
miRNA:   3'- cCuuACUUCU-GUACgGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 36426 0.67 1
Target:  5'- uGGAA-GAAGACGcugauuuauaUGCCUGUa -3'
miRNA:   3'- -CCUUaCUUCUGU----------ACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 36898 0.67 0.999999
Target:  5'- aGGggUGggGuugagGCCUGCc -3'
miRNA:   3'- -CCuuACuuCugua-CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 55034 0.67 0.999999
Target:  5'- cGGGAUGggGGuCGgggccgggGCCUGCc -3'
miRNA:   3'- -CCUUACuuCU-GUa-------CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 60300 0.67 0.999999
Target:  5'- --cAUGAGGGCuuUGCCUGCc -3'
miRNA:   3'- ccuUACUUCUGu-ACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 31637 0.67 0.999999
Target:  5'- ----cGggGGgGUGCCUGCa -3'
miRNA:   3'- ccuuaCuuCUgUACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 25982 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 29060 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 22904 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 19826 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 16748 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 13670 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 108166 0.68 0.999997
Target:  5'- cGGAggGUGAGGcUGUGCCUGUg -3'
miRNA:   3'- -CCU--UACUUCuGUACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 131385 0.68 0.999996
Target:  5'- ----cGGAGGCAgagGCCUGCa -3'
miRNA:   3'- ccuuaCUUCUGUa--CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 74346 0.69 0.999988
Target:  5'- cGGuuUGAAGG--UGCCUGCUg -3'
miRNA:   3'- -CCuuACUUCUguACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 64824 0.69 0.999987
Target:  5'- cGGcgGAAGACAUccuccugGCCUGCg -3'
miRNA:   3'- cCUuaCUUCUGUA-------CGGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.