Results 1 - 20 of 37 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 13670 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 14243 | 0.75 | 0.98893 |
Target: 5'- aGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 16748 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 17321 | 0.75 | 0.98893 |
Target: 5'- aGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 19826 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 20399 | 0.75 | 0.991846 |
Target: 5'- gGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 22904 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 23476 | 0.75 | 0.98893 |
Target: 5'- aGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 25982 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 26554 | 0.75 | 0.98893 |
Target: 5'- aGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 29060 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 29632 | 0.75 | 0.98893 |
Target: 5'- aGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 31637 | 0.67 | 0.999999 |
Target: 5'- ----cGggGGgGUGCCUGCa -3' miRNA: 3'- ccuuaCuuCUgUACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 31689 | 0.71 | 0.999707 |
Target: 5'- cGGcgccgGggGAgGUGCCUGCUg -3' miRNA: 3'- -CCuua--CuuCUgUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 31734 | 0.69 | 0.999982 |
Target: 5'- cGGcgccgGggGGgGUGCCUGCUg -3' miRNA: 3'- -CCuua--CuuCUgUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | + | 36426 | 0.67 | 1 |
Target: 5'- uGGAA-GAAGACGcugauuuauaUGCCUGUa -3' miRNA: 3'- -CCUUaCUUCUGU----------ACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | + | 36898 | 0.67 | 0.999999 |
Target: 5'- aGGggUGggGuugagGCCUGCc -3' miRNA: 3'- -CCuuACuuCugua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 46311 | 0.71 | 0.999776 |
Target: 5'- aGGGccc-GGGCAUGCCUGCUg -3' miRNA: 3'- -CCUuacuUCUGUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | + | 55034 | 0.67 | 0.999999 |
Target: 5'- cGGGAUGggGGuCGgggccgggGCCUGCc -3' miRNA: 3'- -CCUUACuuCU-GUa-------CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | + | 60300 | 0.67 | 0.999999 |
Target: 5'- --cAUGAGGGCuuUGCCUGCc -3' miRNA: 3'- ccuUACUUCUGu-ACGGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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