miRNA display CGI


Results 21 - 37 of 37 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 64824 0.69 0.999987
Target:  5'- cGGcgGAAGACAUccuccugGCCUGCg -3'
miRNA:   3'- cCUuaCUUCUGUA-------CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 66433 0.66 1
Target:  5'- --cGUGGAGA-AUGCCUGCg -3'
miRNA:   3'- ccuUACUUCUgUACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 74346 0.69 0.999988
Target:  5'- cGGuuUGAAGG--UGCCUGCUg -3'
miRNA:   3'- -CCuuACUUCUguACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 76321 0.71 0.999619
Target:  5'- aGggUGAAGACuUGCCUGa- -3'
miRNA:   3'- cCuuACUUCUGuACGGACga -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 79242 0.7 0.999931
Target:  5'- uGGAAaaAAGACAggUGCCUGCa -3'
miRNA:   3'- -CCUUacUUCUGU--ACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 98855 0.71 0.999831
Target:  5'- aGAAUGgcGGCgggGUGCCUGCg -3'
miRNA:   3'- cCUUACuuCUG---UACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 101180 0.69 0.999975
Target:  5'- cGAGagGAAGACGUGCUUGUa -3'
miRNA:   3'- cCUUa-CUUCUGUACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 108166 0.68 0.999997
Target:  5'- cGGAggGUGAGGcUGUGCCUGUg -3'
miRNA:   3'- -CCU--UACUUCuGUACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 114503 0.66 1
Target:  5'- gGGGAUGcGGAUAUGCUUGa- -3'
miRNA:   3'- -CCUUACuUCUGUACGGACga -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 114916 0.66 1
Target:  5'- uGGAUGggGGCguGUGUCUGUUu -3'
miRNA:   3'- cCUUACuuCUG--UACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 124741 0.66 1
Target:  5'- aGGAUGAAGcuGCucugcguuuuGUGCCUGCUg -3'
miRNA:   3'- cCUUACUUC--UG----------UACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 126008 0.71 0.999831
Target:  5'- gGGAGUGggGGCGguggGCUucUGCUg -3'
miRNA:   3'- -CCUUACuuCUGUa---CGG--ACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 131385 0.68 0.999996
Target:  5'- ----cGGAGGCAgagGCCUGCa -3'
miRNA:   3'- ccuuaCUUCUGUa--CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 143791 1 0.141724
Target:  5'- aGGAAUGAAGACAUGCCUGCUu -3'
miRNA:   3'- -CCUUACUUCUGUACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 148147 0.74 0.996544
Target:  5'- aGGGAUGAAGGCcgG-CUGCUa -3'
miRNA:   3'- -CCUUACUUCUGuaCgGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 148523 0.66 1
Target:  5'- aGggUGGAGAgCAUG-CUGCUg -3'
miRNA:   3'- cCuuACUUCU-GUACgGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 149970 0.79 0.936167
Target:  5'- gGGAGUGggGGCcaggGCCUGCa -3'
miRNA:   3'- -CCUUACuuCUGua--CGGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.