Results 21 - 37 of 37 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 29060 | 0.67 | 0.999998 |
Target: 5'- aGGggUGAGGACuuugGCCU-CUg -3' miRNA: 3'- -CCuuACUUCUGua--CGGAcGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 29632 | 0.75 | 0.98893 |
Target: 5'- aGGAcgGAGGGCcugGCCUGCg -3' miRNA: 3'- -CCUuaCUUCUGua-CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 31637 | 0.67 | 0.999999 |
Target: 5'- ----cGggGGgGUGCCUGCa -3' miRNA: 3'- ccuuaCuuCUgUACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 31689 | 0.71 | 0.999707 |
Target: 5'- cGGcgccgGggGAgGUGCCUGCUg -3' miRNA: 3'- -CCuua--CuuCUgUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 31734 | 0.69 | 0.999982 |
Target: 5'- cGGcgccgGggGGgGUGCCUGCUg -3' miRNA: 3'- -CCuua--CuuCUgUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 46311 | 0.71 | 0.999776 |
Target: 5'- aGGGccc-GGGCAUGCCUGCUg -3' miRNA: 3'- -CCUuacuUCUGUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 64824 | 0.69 | 0.999987 |
Target: 5'- cGGcgGAAGACAUccuccugGCCUGCg -3' miRNA: 3'- cCUuaCUUCUGUA-------CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 66433 | 0.66 | 1 |
Target: 5'- --cGUGGAGA-AUGCCUGCg -3' miRNA: 3'- ccuUACUUCUgUACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 74346 | 0.69 | 0.999988 |
Target: 5'- cGGuuUGAAGG--UGCCUGCUg -3' miRNA: 3'- -CCuuACUUCUguACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 79242 | 0.7 | 0.999931 |
Target: 5'- uGGAAaaAAGACAggUGCCUGCa -3' miRNA: 3'- -CCUUacUUCUGU--ACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 101180 | 0.69 | 0.999975 |
Target: 5'- cGAGagGAAGACGUGCUUGUa -3' miRNA: 3'- cCUUa-CUUCUGUACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 108166 | 0.68 | 0.999997 |
Target: 5'- cGGAggGUGAGGcUGUGCCUGUg -3' miRNA: 3'- -CCU--UACUUCuGUACGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 114503 | 0.66 | 1 |
Target: 5'- gGGGAUGcGGAUAUGCUUGa- -3' miRNA: 3'- -CCUUACuUCUGUACGGACga -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 124741 | 0.66 | 1 |
Target: 5'- aGGAUGAAGcuGCucugcguuuuGUGCCUGCUg -3' miRNA: 3'- cCUUACUUC--UG----------UACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 131385 | 0.68 | 0.999996 |
Target: 5'- ----cGGAGGCAgagGCCUGCa -3' miRNA: 3'- ccuuaCUUCUGUa--CGGACGa -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 143791 | 1 | 0.141724 |
Target: 5'- aGGAAUGAAGACAUGCCUGCUu -3' miRNA: 3'- -CCUUACUUCUGUACGGACGA- -5' |
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MIMAT0003447 | rlcv-miR-rL1-16-5p | -41.5 | NC_006146.1 | - | 148147 | 0.74 | 0.996544 |
Target: 5'- aGGGAUGAAGGCcgG-CUGCUa -3' miRNA: 3'- -CCUUACUUCUGuaCgGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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