miRNA display CGI


Results 21 - 37 of 37 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 22904 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 20399 0.75 0.991846
Target:  5'- gGGAcgGAGGGCcugGCCUGCg -3'
miRNA:   3'- -CCUuaCUUCUGua-CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 19826 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 17321 0.75 0.98893
Target:  5'- aGGAcgGAGGGCcugGCCUGCg -3'
miRNA:   3'- -CCUuaCUUCUGua-CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 16748 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 14243 0.75 0.98893
Target:  5'- aGGAcgGAGGGCcugGCCUGCg -3'
miRNA:   3'- -CCUuaCUUCUGua-CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 - 13670 0.67 0.999998
Target:  5'- aGGggUGAGGACuuugGCCU-CUg -3'
miRNA:   3'- -CCuuACUUCUGua--CGGAcGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 149970 0.79 0.936167
Target:  5'- gGGAGUGggGGCcaggGCCUGCa -3'
miRNA:   3'- -CCUUACuuCUGua--CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 148523 0.66 1
Target:  5'- aGggUGGAGAgCAUG-CUGCUg -3'
miRNA:   3'- cCuuACUUCU-GUACgGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 126008 0.71 0.999831
Target:  5'- gGGAGUGggGGCGguggGCUucUGCUg -3'
miRNA:   3'- -CCUUACuuCUGUa---CGG--ACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 114916 0.66 1
Target:  5'- uGGAUGggGGCguGUGUCUGUUu -3'
miRNA:   3'- cCUUACuuCUG--UACGGACGA- -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 98855 0.71 0.999831
Target:  5'- aGAAUGgcGGCgggGUGCCUGCg -3'
miRNA:   3'- cCUUACuuCUG---UACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 76321 0.71 0.999619
Target:  5'- aGggUGAAGACuUGCCUGa- -3'
miRNA:   3'- cCuuACUUCUGuACGGACga -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 60300 0.67 0.999999
Target:  5'- --cAUGAGGGCuuUGCCUGCc -3'
miRNA:   3'- ccuUACUUCUGu-ACGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 55034 0.67 0.999999
Target:  5'- cGGGAUGggGGuCGgggccgggGCCUGCc -3'
miRNA:   3'- -CCUUACuuCU-GUa-------CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 36898 0.67 0.999999
Target:  5'- aGGggUGggGuugagGCCUGCc -3'
miRNA:   3'- -CCuuACuuCugua-CGGACGa -5'
MIMAT0003447 rlcv-miR-rL1-16-5p -41.5 NC_006146.1 + 36426 0.67 1
Target:  5'- uGGAA-GAAGACGcugauuuauaUGCCUGUa -3'
miRNA:   3'- -CCUUaCUUCUGU----------ACGGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.