miRNA display CGI


Results 41 - 60 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39038 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38967 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38843 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38789 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38718 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38664 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38539 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38468 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38414 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38289 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39217 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 83023 0.67 0.997869
Target:  5'- cGGGGGGGCAUCuGGCuc-CGAg -3'
miRNA:   3'- aUUCCCCUGUGGuCCGuauGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39592 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39717 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39663 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39538 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39467 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39413 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39342 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39288 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.