miRNA display CGI


Results 41 - 60 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 103546 0.66 0.998245
Target:  5'- -cGGGGGAgAUCAuGGCAUccgGCAAg -3'
miRNA:   3'- auUCCCCUgUGGU-CCGUA---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 105358 0.67 0.996912
Target:  5'- --cGGGGGCGCCccuGGCAgagaggugGCAGc -3'
miRNA:   3'- auuCCCCUGUGGu--CCGUa-------UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 130240 0.79 0.62573
Target:  5'- aAGGGGGGCACUAaGCAUGCAGg -3'
miRNA:   3'- aUUCCCCUGUGGUcCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 134928 0.71 0.959329
Target:  5'- aGAGGGGGCGa-AGGCGUGCc- -3'
miRNA:   3'- aUUCCCCUGUggUCCGUAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 139774 0.7 0.970259
Target:  5'- cUAAGaGGACG-CAGGCAUACAAg -3'
miRNA:   3'- -AUUCcCCUGUgGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 140689 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 140790 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 140892 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 140994 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141096 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141198 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141300 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141402 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141504 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141606 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141809 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141911 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 142013 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 142115 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 142217 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.