miRNA display CGI


Results 61 - 80 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39467 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38414 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38289 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38789 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39663 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39038 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39538 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38539 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39413 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38664 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39288 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39163 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 169648 0.68 0.994834
Target:  5'- -cGGGGGGCgccGCCGGGC--GCAGc -3'
miRNA:   3'- auUCCCCUG---UGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 61447 0.68 0.993931
Target:  5'- cGGGGGcGGCGgCGGGCGUAgAGg -3'
miRNA:   3'- aUUCCC-CUGUgGUCCGUAUgUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 169987 0.68 0.993931
Target:  5'- -cGGGGGGCAUCGGGgGgugggGCAu -3'
miRNA:   3'- auUCCCCUGUGGUCCgUa----UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 47000 0.68 0.993931
Target:  5'- cAGGGuGGugGCCAGGCcguuGUugGAu -3'
miRNA:   3'- aUUCC-CCugUGGUCCG----UAugUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 171047 0.68 0.993931
Target:  5'- -cGGGGGGCAUCGGGgGgugggGCAu -3'
miRNA:   3'- auUCCCCUGUGGUCCgUa----UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 5914 0.68 0.992904
Target:  5'- cUAGGGGGACAauaUCAGGCuaaauucaguguAUGCAu -3'
miRNA:   3'- -AUUCCCCUGU---GGUCCG------------UAUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 157378 0.68 0.992904
Target:  5'- -uGGGGGGCACCGGuGUGgugGCGu -3'
miRNA:   3'- auUCCCCUGUGGUC-CGUa--UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 62824 0.68 0.992904
Target:  5'- -cAGGGGugGCUGGGCGUcuGCc- -3'
miRNA:   3'- auUCCCCugUGGUCCGUA--UGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.