miRNA display CGI


Results 41 - 60 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 22155 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 12949 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 34431 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 16018 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 170707 0.67 0.996912
Target:  5'- -cGGGGGGCGCCGcGCGggcGCAGc -3'
miRNA:   3'- auUCCCCUGUGGUcCGUa--UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 28293 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 25224 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 105358 0.67 0.996912
Target:  5'- --cGGGGGCGCCccuGGCAgagaggugGCAGc -3'
miRNA:   3'- auuCCCCUGUGGu--CCGUa-------UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 92958 0.67 0.996856
Target:  5'- aGAGGGGGCuguuCCuGGCAagagucuUGCAGg -3'
miRNA:   3'- aUUCCCCUGu---GGuCCGU-------AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39217 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38343 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38468 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39592 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38718 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39717 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39467 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38843 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38967 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39342 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38593 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.