Results 21 - 40 of 148 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 19950 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 13286 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 31700 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 22493 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 26088 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 28631 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 16881 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 23019 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 25562 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 13812 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 10610 | 0.67 | 0.997869 |
Target: 5'- cAAGGGGACAagUguGGCAgguggGCGGg -3' miRNA: 3'- aUUCCCCUGU--GguCCGUa----UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 83023 | 0.67 | 0.997869 |
Target: 5'- cGGGGGGGCAUCuGGCuc-CGAg -3' miRNA: 3'- aUUCCCCUGUGGuCCGuauGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 74312 | 0.67 | 0.997869 |
Target: 5'- cAGGGGGAUGCCAgaggccgcguGGCGUGg-- -3' miRNA: 3'- aUUCCCCUGUGGU----------CCGUAUguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 61652 | 0.67 | 0.997869 |
Target: 5'- cGAGcGGGACACCcgGGGC--ACAGa -3' miRNA: 3'- aUUC-CCCUGUGG--UCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 60636 | 0.67 | 0.997427 |
Target: 5'- gAGGGaGGugGgCCAGGCAaGCGGu -3' miRNA: 3'- aUUCC-CCugU-GGUCCGUaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 161904 | 0.67 | 0.997427 |
Target: 5'- --cGGGGGCucCCGGGCccACGAa -3' miRNA: 3'- auuCCCCUGu-GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 170707 | 0.67 | 0.996912 |
Target: 5'- -cGGGGGGCGCCGcGCGggcGCAGc -3' miRNA: 3'- auUCCCCUGUGGUcCGUa--UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 31362 | 0.67 | 0.996912 |
Target: 5'- cGAGGaGGCGCCAGGC--GCGGg -3' miRNA: 3'- aUUCCcCUGUGGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 34431 | 0.67 | 0.996912 |
Target: 5'- cGAGGaGGCGCCAGGC--GCGGg -3' miRNA: 3'- aUUCCcCUGUGGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 22155 | 0.67 | 0.996912 |
Target: 5'- cGAGGaGGCGCCAGGC--GCGGg -3' miRNA: 3'- aUUCCcCUGUGGUCCGuaUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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