Results 21 - 40 of 148 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 140790 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 143032 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 141402 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 141198 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 140892 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 141300 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 140994 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 141606 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142726 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142828 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 141809 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142930 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142013 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142625 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142115 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142421 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142319 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142217 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 142523 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 141911 | 0.7 | 0.978907 |
Target: 5'- cGGGGGGugGCC-GGC-UGCAGc -3' miRNA: 3'- aUUCCCCugUGGuCCGuAUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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