miRNA display CGI


Results 21 - 40 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 22155 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 22493 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 23019 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 23246 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 24520 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 25224 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 25562 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 26088 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 26315 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 27589 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 28293 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 28631 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 29156 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 29384 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 30658 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 31362 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 31700 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 32225 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 32453 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 33727 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.