miRNA display CGI


Results 1 - 9 of 9 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 + 167238 0.66 1
Target:  5'- gUGUGUAGGAGGgGUGggUUc- -3'
miRNA:   3'- gACAUAUCCUUCaCGCuuGAac -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 + 57786 0.68 0.999999
Target:  5'- aCUGgaggGGGAAG-GCGAGCUg- -3'
miRNA:   3'- -GACaua-UCCUUCaCGCUUGAac -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 - 38083 0.68 0.999999
Target:  5'- aUGcAUAGG-AGUGCGAACaUGg -3'
miRNA:   3'- gACaUAUCCuUCACGCUUGaAC- -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 - 88258 0.68 0.999998
Target:  5'- -aGUGgcGGAcugcaGGUGUGAACUUGg -3'
miRNA:   3'- gaCAUauCCU-----UCACGCUUGAAC- -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 - 132151 0.69 0.999988
Target:  5'- -----aAGGAGGUGCGGACUc- -3'
miRNA:   3'- gacauaUCCUUCACGCUUGAac -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 + 158608 0.7 0.999967
Target:  5'- -gGUGgcGGGggGUGCGGGCUg- -3'
miRNA:   3'- gaCAUa-UCCuuCACGCUUGAac -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 - 130758 0.7 0.999967
Target:  5'- uUGcUAUGGGAGGUGgGGGCUg- -3'
miRNA:   3'- gAC-AUAUCCUUCACgCUUGAac -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 - 88376 0.72 0.999546
Target:  5'- gCUGUGUGGGcgacauggaacucAAGUGUGAACUUu -3'
miRNA:   3'- -GACAUAUCC-------------UUCACGCUUGAAc -5'
MIMAT0003717 ebv-miR-BART18 -41.6 NC_007605.1 - 146010 1.03 0.114868
Target:  5'- aCUGUAUAGGAAGUGCGAACUUGa -3'
miRNA:   3'- -GACAUAUCCUUCACGCUUGAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.